Methods Of Lowering The Error Rate Of Massively Parallel Dna Sequencing Using Duplex Consensus Sequencing - EP2828218

The patent EP2828218 was granted to University OF Washington Through ITS Center FOR Commercialization on Apr 7, 2021. The application was originally filed on Mar 15, 2013 under application number EP13764186A. The patent is currently recorded with a legal status of "Revoked".

EP2828218

UNIVERSITY OF WASHINGTON THROUGH ITS CENTER FOR COMMERCIALIZATION
Application Number
EP13764186A
Filing Date
Mar 15, 2013
Status
Revoked
Oct 3, 2025
Grant Date
Apr 7, 2021
External Links
Slate, Register, Google Patents

Patent Summary

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Patent Oppositions (3)

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LEWIS SILKINMay 5, 2021ADMISSIBLE
MARGARET DIXONMay 5, 2021ADMISSIBLE
WITHERS & ROGERSMay 4, 2021ADMISSIBLE

Patent Citations (7) New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePublication NumberPublication Link
EXAMINATIONWO2006113422
INTERNATIONAL-SEARCH-REPORTUS2008167195
INTERNATIONAL-SEARCH-REPORTUS2009298075
INTERNATIONAL-SEARCH-REPORTUS2011301042
OPPOSITIONUS5308751
OPPOSITIONWO2012142213
OPPOSITIONWO2013123442

Non-Patent Literature (NPL) Citations (14) New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference TextLink
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EXAMINATION- WIEMANN S ET AL, "SIMULTANEOUS ON-LINE DNA SEQUENCING ON BOTH STRANDS WITH TWO FLUORESCENT DYES", ANALYTICAL BIOCHEMISTRY, ELSEVIER, AMSTERDAM, NL, (19950101), vol. 224, no. 1, doi:10.1006/ABIO.1995.1015, ISSN 0003-2697, pages 117 - 121, XP000486746
OPPOSITION- BENTLEY DAVID R ET AL, "Accurate whole human genome sequencing using reversible terminator chemistry.", Nature, Nature Publishing Group UK, London, London, (20081106), vol. 456, no. 7218, doi:10.1038/nature07517, ISSN 0028-0836, pages 53 - 59, XP002558230
OPPOSITION- I. Kinde, J. Wu, N. Papadopoulos, K. W. Kinzler, B. Vogelstein, "Detection and quantification of rare mutations with massively parallel sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20110607), vol. 108, no. 23, doi:10.1073/pnas.1105422108, ISSN 0027-8424, pages 9530 - 9535, XP055732702
OPPOSITION- KINDE et al., "Detection and quantification of rare mutations with massively parallel sequencing", PNAS, (20110607), pages 9530 - 9535, XP055732702
OPPOSITION- K. Shiroguchi, Jia T. Z., Sims P. A., Xie X. S., "Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20120124), vol. 109, no. 4, doi:10.1073/pnas.1118018109, ISSN 00278424, pages 1347 - 1352, XP055037481
OPPOSITION- K. Shiroguchi, T. Z. Jia, P. A. Sims, X. S. Xie, "Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20120124), vol. 109, no. 4, doi:10.1073/pnas.1118018109, ISSN 0027-8424, pages 1347 - 1352, XP055428301
OPPOSITION- SHIROGUCHI et al., "Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes", PNAS, (20120109), vol. 109, no. 4, doi:10.1073/pnas.1118018109, pages 1347 - 1352, XP055428301
OPPOSITION- M. W. Schmitt, S. R. Kennedy, J. J. Salk, E. J. Fox, J. B. Hiatt, L. A. Loeb, "Detection of ultra-rare mutations by next-generation sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20120904), vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 00278424, pages 14508 - 14513, XP055161683
OPPOSITION- SCHMITT et al., "Detection of ultra-rare mutations by next-generation sequencing", PNAS, (20120904), vol. 109, no. 36, doi:10.1073/pnas.1208715109, pages 14508 - 14513, XP055161683
OPPOSITION- TRAVERS KEVIN J ET AL, "A flexible and efficient template format for circular consensus sequencing and SNP detection.", Nucleic Acids research, Oxford University Press, GB, GB , (20100801), vol. 38, no. 15, doi:10.1093/NAR/GKQ543, ISSN 1362-4962, pages 1 - 8, XP002615293
OPPOSITION- KAUR M, MAKRIGIORGOS G M, "Novel amplification of DNA in a hairpin structure: towards a radical elimination of PCR errors from amplified DNA.", Nucleic Acids Research, Oxford University Press, GB, GB , (20030315), vol. 31, no. 6, doi:10.1093/nar/gng026, ISSN 0305-1048, pages e26/1 - E26/7, XP002394810
SEARCH- TEEMU KIVIOJA ET AL, "Counting absolute numbers of molecules using unique molecular identifiers", NATURE METHODS, NATURE PUBLISHING GROUP, GB, vol. 9, no. 1, doi:10.1038/NMETH.1778, ISSN 1548-7105, (20120101), pages 72 - 74, (20111120), XP002722751 [X] 1,4,5,7,8,10,11,13 * abstract * * "Online Methods" * [Y] 12,14,15 [I] 2,3,6,9
SEARCH- K. SHIROGUCHI ET AL, "Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, (20120109), vol. 109, no. 4, doi:10.1073/pnas.1118018109, ISSN 0027-8424, pages 1347 - 1352, XP055037481 [X] 1-15 * abstract * [Y] 12,14,15

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