IP Verse

Proteomic Sample Preparation Using Paramagnetic Beads - EP3102612

The patent EP3102612 was granted to European Molecular Biology Laboratory on Oct 9, 2024. The application was originally filed on Feb 9, 2015 under application number EP15703093A. The patent is currently recorded with a legal status of "Granted And Under Opposition".

EP3102612

EUROPEAN MOLECULAR BIOLOGY LABORATORY
Application Number
EP15703093A
Filing Date
Feb 9, 2015
Status
Granted And Under Opposition
Sep 6, 2024
Grant Date
Oct 9, 2024
External Links
Slate, Register, Google Patents

Patent Summary

Patent Family

Patent Family

Patent Oppositions

Patent oppositions filed by competitors challenge the validity of a granted patent. These oppositions are typically based on claims of prior art, lack of novelty, or non-obviousness. They are a key part of the process for determining a patent's strength and enforceability.

CompanyOpposition DateRepresentativeOpposition Status

Get instant alerts for new oppositions and patent status changes

JAMES POOLEJul 9, 2025CARPMAELS & RANSFORDADMISSIBLE

Patent Citations (15) New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePublication NumberPublication Link
EXAMINATIONEP2060919
EXAMINATIONUS2005136477
EXAMINATIONUS2008220532
EXAMINATIONUS2011133077
EXAMINATIONUS6649419
EXAMINATIONWO2008116182
EXAMINATIONWO2008138916
INTERNATIONAL-SEARCH-REPORTUS2008220532
INTERNATIONAL-SEARCH-REPORTUS2011133077
INTERNATIONAL-SEARCH-REPORTUS6649419
INTERNATIONAL-SEARCH-REPORTWO2008138916
OPPOSITIONUS2005136477
OPPOSITIONUS2009048439
OPPOSITIONUS5523231
OTHERUS5523231

Non-Patent Literature (NPL) Citations (29) New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference TextLink
EXAMINATION- (20130831), URL: http://lucigen.com/docs/manuals/MA134-NxSeq-DNA-Prep-Kit.pdf, (20141204), XP055156845-
EXAMINATION- Christopher S Hughes ET AL, "Supplementary Information for Ultrasensitive proteome analysis using paramagnetic bead technology", (20141001), URL: http://msb.embopress.org/highwire/filestream/49977/field_highwire_a_enclosures/0/supplementary-material.inline-supplementary-material-1.pdf?download=true, (20150325), XP055179053-
EXAMINATION- YEH CHIA-HAO ET AL, "Magnetic bead-based hydrophilic interaction liquid chromatography for glycopeptide enrichments", JOURNAL OF CHROMATOGRAPHY A, (20120210), vol. 1224, doi:10.1016/J.CHROMA.2011.12.057, ISSN 0021-9673, pages 70 - 78, XP028886208
EXAMINATION- CALVANO C D ET AL, "Assessment of lectin and HILIC based enrichment protocols for characterization of serum glycoproteins by mass spectrometry", JOURNAL OF PROTEOMICS, ELSEVIER, AMSTERDAM, NL, vol. 71, no. 3, doi:10.1016/J.JPROT.2008.06.013, ISSN 1874-3919, (20080821), pages 304 - 317, (20080704), XP023784761
EXAMINATION- SERENA DI PALMA ET AL, "Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis", JOURNAL OF PROTEOMICS, ELSEVIER, AMSTERDAM, NL, vol. 75, no. 13, doi:10.1016/J.JPROT.2012.04.033, ISSN 1874-3919, (20120423), pages 3791 - 3813, (20120504), XP028497068
EXAMINATION- Yoshinao Wada ET AL, "Hydrophilic Affinity Isolation and MALDI Multiple-Stage Tandem Mass Spectrometry of Glycopeptides for Glycoproteomics", Analytical Chemistry, (20041101), vol. 76, no. 22, doi:10.1021/ac049062o, ISSN 0003-2700, pages 6560 - 6565, XP055002923
EXAMINATION- MOGGRIDGE SOPHIE ET AL, "Extending the Compatibility of the SP3 Paramagnetic Bead Processing Approach for Proteomics", JOURNAL OF PROTEOME RESEARCH, (20180322), vol. 17, no. 4, doi:10.1021/acs.jproteome.7b00913, ISSN 1535-3893, pages 1730 - 1740, XP093020679
EXAMINATION- Ronnie Blecher-Gonen ET AL, "High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states", Nature Protocols, (20130221), vol. 8, no. 3, doi:10.1038/nprot.2013.023, ISSN 1754-2189, pages 539 - 554, XP055200053
EXAMINATION- HUGHES CHRISTOPHER S ET AL, "Single-pot, solid-phase-enhanced sample preparation for proteomics experiments", NATURE PROTOCOLS, NATURE PUBLISHING GROUP, GB, vol. 14, no. 1, doi:10.1038/S41596-018-0082-X, ISSN 1754-2189, (20181121), pages 68 - 85, (20181121), XP036660405
EXAMINATION- C. S. HUGHES ET AL, "Ultrasensitive proteome analysis using paramagnetic bead technology", MOLECULAR SYSTEMS BIOLOGY, (20141030), vol. 10, no. 10, doi:10.15252/msb.20145625, pages 757 - 757, XP055178567
OPPOSITION- Anonymous, "Agencourt AMPure XP Manual or Automated Purification & Clean-up", Beckman Coulter Life Sciences, (20170101), Beckman Coulter Life Sciences, URL: https://labplan.ie/content/uploads/2018/03/AMPure-XP-Datasheet.pdf, XP093298797-
OPPOSITION- Anonymous, "ASMS-2023-HILIC-Fractionation", ASMS-2023, (20230101), ASMS-2023, URL: https://resynbio.com/wp-content/uploads/2023/06/ASMS-2023-HILIC-Fractionation.pdf, XP093298802-
OPPOSITION- Anonymous, "SeQuant™ A Practical Guide to HILIC, including ZIC®-HILIC applications", Merck, (20090201), Merck, URL: https://www.researchgate.net/publication/323779604_A_Practical_Guide_to_HILIC_including_ZICR-HILIC_applications, XP093298785-
OPPOSITION- Anonymous, "Thermo Scientific Sera-Mag Magnetic Particles and SpeedBeads", ThermoFisher, (20120101), ThermoFisher, URL: https://tools.thermofisher.com/content/sfs/brochures/Sell%20Sheet-Flyer_Sera-Mag%20Magnetic%20Particles%20and%20SpeedBeads_FINAL.pdf, XP093298783-
OPPOSITION- Zdenka Sabatkova, Oldrich Tokar, Mirka Safarikova, Ivo Safarik, "Magnetic Cation Exchange Isolation of Lysozyme from Native Hen Egg White ", Food Technology and Biotechnology, Sveuciliste u Zagrebu * Prehrambeno-Biotehnoloski Fakultet, Croatia, Croatia , (20070101), vol. 45, no. 4, ISSN 1330-9862, pages 355 - 359, XP093298786-
OPPOSITION- Jack A. Gilbert & Margaret Hughes, "Chapter 14: Gene Expression Profiling: Metatranscriptomics", Jack A. Gilbert & Margaret Hughes, Kwon, Young Min ; Ricke, Steven C. (eds.), High-throughput next generation sequencing : methods and applications; IN: Methods in molecular biology , ISSN 1064-3745 ; Vol. 733, US , Humana Press , (20110223), pages 195 - 205, doi:10.1007/978-1-61779-089-8_14, ISBN 978-1-61779-088-1, XP009562612
OPPOSITION- Bayard, F. ; Raveneau, A. ; Letourneau, A. ; Joucla, G. ; Barbot, C. ; Garbay, B. ; Cabanne, C., "Use of magnetic carboxyl beads to purify a cationic peptide in a batch system", Analytical Biochemistry, Academic Press, Amsterdam, NL, Amsterdam, NL , (20090115), vol. 384, no. 2, doi:10.1016/j.ab.2008.10.016, ISSN 0003-2697, pages 350 - 352, XP025710865
OPPOSITION- Yeh Chia-Hao; Chen Shu-Hui; Li Ding-Tzai; Lin Hong-Ping; Huang Hung-Jen; Chang Chi-I; Shih Wen-Ling; Chern Chi-Liang; Shi Fong-Ku; Hsu Jue-Liang, "Magnetic bead-based hydrophilic interaction liquid chromatography for glycopeptide enrichments", Journal of Chromatography A, ELSEVIER, AMSTERDAM, NL, AMSTERDAM, NL, (19000101), vol. 1224, doi:10.1016/j.chroma.2011.12.057, ISSN 0021-9673, pages 70 - 78, XP028886208
OPPOSITION- Serena Di Palma; Marco L. Hennrich; Albert J.R. Heck; Shabaz Mohammed;, "Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis", Journal of Proteomics, ELSEVIER, AMSTERDAM, NL, AMSTERDAM, NL , (20120423), vol. 75, no. 13, doi:10.1016/j.jprot.2012.04.033, ISSN 1874-3919, pages 3791 - 3813, XP028497068
OPPOSITION- Qingqing Gai; Feng Qu; Tao Zhang; Yukui Zhang;, "Integration of carboxyl modified magnetic particles and aqueous two-phase extraction for selective separation of proteins", TALANTA, ELSEVIER, AMSTERDAM, NL, NL , (20110324), vol. 85, no. 1, doi:10.1016/j.talanta.2011.03.055, ISSN 0039-9140, pages 304 - 309, XP028228571
OPPOSITION- Batth Tanveer S., Tollenaere Maxima.X., Rüther Patrick, Gonzalez-Franquesa Alba, Prabhakar Bhargav S., Bekker-Jensen Simon, Deshmukh Atul S., Olsen Jesper V., "Protein Aggregation Capture on Microparticles Enables Multipurpose Proteomics Sample Preparation", Molecular & Cellular Proteomics, American Society for Biochemistry and Molecular Biology, US, US , (20190501), vol. 18, no. 5, doi:10.1074/mcp.TIR118.001270, ISSN 1535-9476, pages 1027 - 1035, XP055828197
OPPOSITION- Lee Bee Na, "Automated miRNA Isolation Using SPRI", Genetic Engineering & Biotechnology News, Mary Ann Liebert, Inc., (20120901), vol. 32, no. 15, doi:10.1089∕gen.32.15.10, pages 24 - 25, XP093298791
OPPOSITION- Fumihito Miura, Yusuke Enomoto, Ryo Dairiki, Takashi Ito, "Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging", Nucleic Acids Research, Oxford University Press, GB, GB , (20120901), vol. 40, no. 17, doi:10.1093/nar/gks454, ISSN 0305-1048, pages e136 - e136, XP055553435
OPPOSITION- Tanveer Singh Batth, Maxim Ax Tollenaere, Ruther Patrick L, Gonzalez-Franquesa Alba, Prabhakar Bhargav S, Bekker-Jensen Simon H, Deshmukh Atul S, Olsen Jesper V, "Protein aggregation capture on microparticles enables multi-purpose proteomics sample preparation", bioRxiv, Cold Spring Harbor Laboratory Press, doi:10.1101/447904, (20181025), bioRxiv, URL: https://www.biorxiv.org/content/10.1101/447904v1, XP093298805
OPPOSITION- Saiyed ZM; Telang SD; Ramchand CN, "Application of magnetic techniques in the field of drug discovery and biomedicine", BIOMAGNETIC RESEARCH AND TECHNOLOGY, BIOMED CENTRAL, LONDON, GB, GB , (20030918), vol. 1, no. 1, doi:10.1186/1477-044X-1-2, ISSN 1477-044X, page 2, XP021008638
OPPOSITION- Safarik Ivo, Safarikova Mirka, "Magnetic techniques for the isolation and purification of proteins and peptides", BIOMAGNETIC RESEARCH AND TECHNOLOGY, BIOMED CENTRAL, LONDON, GB, GB , vol. 2, no. 1, doi:10.1186/1477-044X-2-7, ISSN 1477-044X, XP093242697
OPPOSITION- Remans Kim, Lebendiker Mario, Abreu Celeste, Maffei Mariano, Sellathurai Shaila, May Marina M., Vaněk Ondřej, De Marco Ario, "Protein purification strategies must consider downstream applications and individual biological characteristics", Microbial cell factories, Springer, (20220401), vol. 21, no. 1, doi:10.1186/s12934-022-01778-5, ISSN 1475-2859, pages 52 - 16, XP093298777
OPPOSITION- C. S. Hughes, S. Foehr, D. A. Garfield, E. E. Furlong, L. M. Steinmetz, J. Krijgsveld, "Ultrasensitive proteome analysis using paramagnetic bead technology", Molecular Systems Biology, (20141030), vol. 10, no. 10, doi:10.15252/msb.20145625, pages 757 - 757, XP055178567
OPPOSITION- Magni Fulvio, Van Der Burgt Yuri E M, Chinello Clizia, Mainini Veronica, Gianazza Erica, Squeo Valeria, Deelder André M, Kienle Marzia Galli, "Biomarkers discovery by peptide and protein profiling in biological fluids based on functionalized magnetic beads purification and mass spectrometry", Blood Transfus, (20100101), vol. 8, no. 3, doi:10.2450/2010.015S, pages s92 - s97, XP093298810

Download Citation Report

Get a free citation report including examiner, opposition, and international search citations.

Get Citation Report

Dossier Documents

The dossier documents provide a comprehensive record of the patent’s prosecution history - including filings, correspondence, and decisions made by patent offices - and are crucial for understanding the patent’s legal journey and any challenges it may have faced during examination.

  • Date

    Description

  • Get instant alerts for new documents