| DESCRIPTION | - ADAMCZYK MJAGURA-BURDZY G, "Spread and survival of promiscuous IncP-1 plasmids", Acta Biochim Pol, (20030000), vol. 50, no. 2, pages 425 - 53 | - |
| DESCRIPTION | - AIZENMAN EENGELBERG-KULKA HGLASER G, "An Escherichia coli chromosomal ''addiction module'' regulated by guanosine [corrected] 3',5'-bispyrophosphate: a model for programmed bacterial cell death", Proc Natl Acad Sci U S A., (19960611), vol. 93, no. 12, pages 6059 - 63 | - |
| DESCRIPTION | - ALLEN HK, "Antibiotic resistance gene discovery in food-producing animals", Curr Opin Microbiol, (20140600), vol. 19, pages 25 - 9 | - |
| DESCRIPTION | - ASLANIDIS CSCHMID KSCHMITT R, "Nucleotide sequences and operon structure of plasmid-borne genes mediating uptake and utilization of raffinose in Escherichia coli", J Bacteriol, (19891200), vol. 171, no. 12, pages 6753 - 63 | - |
| DESCRIPTION | - BERGSTROM CTLIPSITCH MLEVIN BR, "Natural selection, infectious transfer and the existence conditions for bacterial plasmids", Genetics, (20000800), vol. 155, no. 4, pages 1505 - 19 | - |
| DESCRIPTION | - BRUMBAUGH, A. R.MOBLEY, H. L. T., "Preventing urinary tract infection: progress toward an effective Escherichia coli vaccine", Expert Review of Vaccines, (20120000), vol. 11, pages 663 - 676 | - |
| DESCRIPTION | - CERMAK TDOYLE ELCHRISTIAN MWANG LZHANG YSCHMIDT CBAILER JASOMIA NVBOGDANOVE AJVOYTAS DF, Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting, (20110700), vol. 39, no. 12, page e82 | - |
| DESCRIPTION | - ERRATUM, Proc Natl Acad Sci U S A, (19960903), vol. 93, no. 18, page 9991 | - |
| DESCRIPTION | - "Genbank", Database accession no. NC 009141 40824...41483 | - |
| DESCRIPTION | - HEIDELBERG JFNELSON WCSCHOENFELD TBHAYA D, "Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes", PLoS One, (20090000), vol. 4, no. 1, page e4169 | - |
| DESCRIPTION | - HORVATH PCOUTE-MONVOISIN ACROMERO DABOYAVAL PFREMAUX C, "Barrangou R. Comparative analysis of CRISPR loci in lactic acid bacteria genomes", Int J Food Microbiol, (20090430), vol. 131, no. 1, pages 62 - 70 | - |
| DESCRIPTION | - KAPER JBNATARO JPMOBLEY HL, "Pathogenic Escherichia coli.", Nat Rev Microbiol, (20040200), vol. 2, no. 2, pages 123 - 40 | - |
| DESCRIPTION | - LEY REPETERSON DAGORDON JI, "Ecological and evolutionary forces shaping microbial diversity in the human intestine", Cell, (20060224), vol. 124, no. 4, pages 837 - 48 | - |
| DESCRIPTION | - LI THUANG SZHAO XWRIGHT DACARPENTER SSPALDING MHWEEKS DPYANG B, Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes, (20110800), vol. 39, no. 14, pages 6315 - 25 | - |
| DESCRIPTION | - MUROOKA YHARADA T, "Expansion of the host range of coliphage PI and gene transfer from enteric bacteria to other gram-negative bacteria", Appl Environ Microbiol, (19791000), vol. 38, no. 4, pages 754 - 7 | - |
| DESCRIPTION | - OCHMAN HSELANDER RK, "Standard reference strains of Escherichia coli from natural populations", J Bacteriol, (19840200), vol. 157, no. 2, pages 690 - 3 | - |
| DESCRIPTION | - PERICHON BBOGAERTS PLAMBERT TFRANGEUL LCOURVALIN PGALIMAND M, "Sequence of conjugative plasmid pIP1206 mediating resistance to aminoglycosides by 16S rRNA methylation and to hydrophilic fluoroquinolones by efflux", Antimicrob Agents Chemother, (20080700), vol. 52, no. 7, pages 2581 - 92 | - |
| DESCRIPTION | - PHADNIS SHSASAKAWA CBERG DE, "Localization of action of the IS50-encoded transposase protein", Genetics, (19860311), vol. 2, no. 3, pages 421 - 7 | - |
| DESCRIPTION | - SAAVEDRA DE BAST MMINE NVAN MELDEREN L, "Chromosomal toxin-antitoxin systems may act as antiaddiction modules", J Bacteriol, (20080700), vol. 190, no. 13, pages 4603 - 9 | - |
| DESCRIPTION | - SALYERS AASHOEMAKER NBSTEVENS AMLI LY, "Conjugative transposons: an unusual and diverse set of integrated gene transfer elements", Microbiol Rev, (19951200), vol. 59, no. 4, pages 579 - 90 | - |
| DESCRIPTION | - SILBERGELD EKGRAHAM JPRICE LB, "Industrial Food Animal Production, Antimicrobial Resistance, and Human Health", Annu. Rev. Public. Health., (20080400), vol. 29, no. 1, pages 151 - 69 | - |
| DESCRIPTION | - SMILLIE CSSMITH MBFRIEDMAN JCORDERO OXDAVID LAAHN EJ, "Ecology drives a global network of gene exchange connecting the human microbiome", Nature, (20111030), vol. 480, no. 7376, pages 241 - 4 | - |
| DESCRIPTION | - SONG SPARK C, "Organization and regulation of the D-xylose operons in Escherichia coli K-12: XylR acts as a transcriptional activator", J Bacteriol. American Society for Microbiology, (19971100), vol. 179, no. 22, pages 7025 - 32 | - |
| DESCRIPTION | - STEWART, F.M.LEVIN, B.R., "The Population Biology of Bacterial Plasmids: A PRIORI Conditions for the Existence of Conjugationally Transmitted Factors", Genetics, (19770000), vol. 87, no. 2, pages 209 - 228 | - |
| DESCRIPTION | - TSUDA MTAN HMNISHI AFURUKAWA K, "Mobile catabolic genes in bacteria", J Biosci Bioeng, (19990000), vol. 87, no. 4, pages 401 - 10 | - |
| DESCRIPTION | - ULMKE CLENGELER JWSCHMID K, "Identification of a new porin, RafY, encoded by raffinose plasmid pRSD2 of Escherichia coli", J Bacteriol, (19970900), vol. 179, no. 18, pages 5783 - 8 | - |
| DESCRIPTION | - UMOV et al., "Genome editing with engineered zinc finger nucleases", Nat. Rev. Genet., (20100000), vol. 11, pages 636 - 646, XP055598474 | - |
| DESCRIPTION | - VAN MELDEREN LDE BAST MS, "Bacterial Toxin-Antitoxin Systems: More Than Selfish Entities?", PLoS Genet, (20090327), vol. 5, no. 3, page e1000437 | - |
| DESCRIPTION | - FEKETY RKIM KHBROWN DBATTS DHCUDMORE MSILVA J JR, "Epidemiology of antibiotic-associated colitis; isolation of Clostridium difficile from the hospital environment", Am J Med, (19810400), vol. 70, no. 4, doi:10.1016/0002-9343(81)90553-2, pages 906 - 8, XP023218698 | |
| DESCRIPTION | - MAEDER et al., "Rapid ''open-source'' engineering of customized zinc-finger nucleases for highly efficient gene modification", Mol Cell, (20080725), vol. 31, no. 2, doi:10.1016/j.molcel.2008.06.016, pages 294 - 301, XP055143755 | |
| DESCRIPTION | - DELTCHEVA ECHYLINSKI KSHARMA CMGONZALES KCHAO YPIRZADA ZA et al., "0 CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III", Nature, (20110000), vol. 471, no. 7340, doi:10.1038/nature09886, pages 602 - 607, XP055619637 | |
| DESCRIPTION | - O'CONNELL MROAKES BLSTERNBERG SHEAST-SELETSKY AKAPLAN MDOUDNA JA, "Programmable RNA recognition and cleavage by CRISPR/Cas9", Nature, (20141211), vol. 516, no. 7530, doi:10.1038/nature13769, pages 263 - 6, XP055168138 | |
| DESCRIPTION | - JIANG WBIKARD DCOX DZHANG FMARRAFFINI LA, "RNA-guided editing of bacterial genomes using CRISPR-Cas systems", Nat Biotechnol., (20130300), vol. 31, no. 3, doi:10.1038/nbt.2508, pages 233 - 9, XP055249123 | |
| DESCRIPTION | - JOUNG et al., "TALENs: a widely applicable technology for targeted genome editing", Nat. Rev. Mol. Cell Biol., (20120000), vol. 14, doi:10.1038/nrm3486, pages 49 - 55, XP055282847 | |
| DESCRIPTION | - MIYADA CGSTOLTZFUS LWILCOX G, "Regulation of the araC gene of Escherichia coli: catabolite repression, autoregulation, and effect on araBAD expression", Proc Natl Acad Sci USA., (19840700), vol. 81, no. 13, doi:10.1073/pnas.81.13.4120, pages 4120 - 4, XP055761595 | |
| DESCRIPTION | - DICARLO JENORVILLE JEMALI PRIOS XAACH JCHURCH GM, "Genome engineering in Saccharomyces cerevisiae using CRISPR-Cas systems", Nucleic Acids Res., (20130400), vol. 41, no. 7, doi:10.1093/nar/gkt135, pages 4336 - 43, XP055086617 | |
| DESCRIPTION | - BARRANGOU RFREMAUX CDEVEAU HRICHARDS MBOYAVAL PMOINEAU SROMERO DAHORVATH P, "CRISPR provides acquired resistance against viruses in prokaryotes", Science, (20070323), vol. 315, no. 5819, doi:10.1126/science.1138140, pages 1709 - 12, XP002428071 | |
| DESCRIPTION | - JINEK MCHYLINSKI KFONFARA IHAUER MDOUDNA JACHARPENTIER E, "A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity", Science, (20120817), vol. 337, no. 6096, doi:10.1126/science.1225829, pages 816 - 21, XP055229606 | |
| DESCRIPTION | - CONG LRAN FACOX DLIN SBARRETTO RHABIB NHSU PDWU XJIANG WMARRAFFINI LA, "Multiplex genome engineering using CRISPR/Cas systems", Science, (20130215), vol. 339, no. 6121, doi:10.1126/science.1231143, pages 819 - 23, XP055458249 | |
| DESCRIPTION | - MALI PYANG LESVELT KMAACH JGUELL MDICARLO JENORVILLE JECHURCH GM, "RNA-guided human genome engineering via Cas9", Science, (20130215), vol. 339, no. 6121, doi:10.1126/science.1232033, pages 823 - 6, XP055469277 | |
| DESCRIPTION | - DEVEAU HBARRANGOU RGARNEAU JELABONTE JFREMAUX CBOYAVAL PROMERO DAHORVATH PMOINEAU S, "Phage response to CRISPR-encoded resistance in Streptococcus thermophilus", J Bacteriol, (20080200), vol. 190, no. 4, doi:10.1128/JB.01412-07, pages 1390 - 400, XP002679468 | |
| DESCRIPTION | - HORVATH PROMERO DACOUTE-MONVOISIN ACRICHARDS MDEVEAU HMOINEAU SBOYAVAL PFREMAUX CBARRANGOU R, "Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus", J Bacteriol, (20080200), vol. 190, no. 4, doi:10.1128/JB.01415-07, pages 1401 - 12, XP002517926 | |
| DESCRIPTION | - ISHINO YSHINAGAWA HMAKINO KAMEMURA MNAKATA A, "Nucleotide sequence of the iap gene, responsible for alkaline phosphatase isozyme conversion in Escherichia coli, and identification of the gene product", J Bacteriol, (19871200), vol. 169, no. 12, doi:10.1128/jb.169.12.5429-5433.1987, pages 5429 - 33, XP055463130 | |
| DESCRIPTION | - BHAYA DDAVISON MBARRANGOU R, "CRISPR-Cas systems in bacteria and archaea: versatile small RNAs for adaptive defense and regulation", Annu Rev Genet, (20110000), vol. 45, doi:10.1146/annurev-genet-110410-132430, pages 273 - 97, XP055118832 | |
| DESCRIPTION | - ARCHER CTKIM JFJEONG HPARK JHVICKERS CELEE SYNIELSEN LK, "The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli", BMC Genomics, (20110106), vol. 12, doi:10.1186/1471-2164-12-9, page 9, XP021086506 | |
| DESCRIPTION | - KUNIN VSOREK RHUGENHOLTZ P, "Evolutionary conservation of sequence and secondary structures in CRISPR repeats", Genome Biol, (20070000), vol. 8, no. 4, doi:10.1186/gb-2007-8-4-r61, page R61, XP021027392 | |
| DESCRIPTION | - MARTIN LCHE AENDY D, "Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression", PLoS ONE, (20090000), vol. 4, no. 11, doi:10.1371/journal.pone.0007569, page e7569, XP055606766 | |
| DESCRIPTION | - SILVA et al., "Meganucleases and Other Tools for Targeted Genome Engineering: Perspectives and Challenges for Gene Therapy", Curr Gene Ther, (20110200), vol. 11, no. 1, doi:10.2174/156652311794520111, pages 11 - 27, XP002706113 | |
| DESCRIPTION | - JINEK MEAST ACHENG ALIN SMA EDOUDNA J, "RNA-programmed genome editing in human cells", Elife, (20130000), vol. 2, doi:10.7554/eLife.00471, page e00471, XP002699851 | |
| INTERNATIONAL-SEARCH-REPORT | - JINEK M et al., "A programmable dual- RNA-guided DNA endonuclease in adaptive, bacterial immunity.", Science, (20120817), vol. 337, no. 6096, pages 816 - 821, XP055067747 [A] 1 * . Especially abstract. * | |
| INTERNATIONAL-SEARCH-REPORT | - HAGENS et al., "Therapy of experimental pseudomonas infections with a nonreplicating genetically modified phage.", Antimicrob Agents Chemother, (20041000), vol. 48, no. 10, pages 3817 - 3822, XP002483597 [Y] 1-6, 8-20, 22/(19, 20), 23, 35 * . Especially abstract, pg 3818 col 1 para 1. * | |
| INTERNATIONAL-SEARCH-REPORT | - GOMAA et al., "Programmable Removal of Bacterial Strains by Use of Genome- Targeting CRISPR-Cas Systems.", MBio, vol. 5, no. 1 e00928-13., pages 1 - 9, XP055227960 [Y] 1-6, 8-20, 22/(19, 20), 23, 35 * . Especially pg 4 col 2 para 2; pg 5 col 2 para 2, pg 6 col 1 para 3-4. * | |
| OPPOSITION | - Anonymous, "Operation CRISPR: Deploying precision guided tools to target unique species in a complex microbiome", (20130101), pages 1 - 1, UCSF, URL: https://2013.igem.org/Team:UCSF, (20230929), XP093087292 | - |
| OPPOSITION | - Aslanidis Charalampos, Schmid Kurt, Schmitt Rudiger, "Nucleotide Sequences and Operon Structure of Plasmid-Borne Genes Mediating Uptake and Utilization of Raffinose in Escherichia colit", Journal of Bacteriology, (19891201), vol. 171, no. 12, pages 6753 - 6763, XP093087310 | - |
| OPPOSITION | - C Platteeuw , I van Alen-Boerrigter, S van Schalkwijk, W M de Vos, "Food-grade cloning and expression system for Lactococcus lactis", Applied and environmental microbiology, US , (19960301), vol. 62, no. 3, doi:10.1128/aem.62.3.1008-1013.1996, ISSN 0099-2240, pages 1008 - 1013, XP001038204 | - |
| OPPOSITION | - Labrie, S. ; Bart, C. ; Vadeboncoeur, C. ; Moineau, S., "Use of an @?-Galactosidase Gene as a Food-Grade Selection Marker for Streptococcus thermophilus", Journal of Dairy Science, US , (20050701), vol. 88, no. 7, ISSN 0022-0302, pages 2341 - 2347, XP026954572 | - |
| OPPOSITION | - Bikard David; Hatoum-Aslan Asma; Mucida Daniel; Marraffini Luciano A, "CRISPR Interference Can Prevent Natural Transformation and Virulence Acquisition during In Vivo Bacterial Infection", Cell Host & Microbe, NL , (20120816), vol. 12, no. 2, doi:10.1016/j.chom.2012.06.003, ISSN 1931-3128, pages 177 - 186, XP028934538 | |
| OPPOSITION | - Trieu-Cuot, P. ; Carlier, C. ; Martin, P. ; Courvalin, P., "Plasmid transfer by conjugation from Escherichia coli to Gram-positive bacteria", FEMS Microbiology Letters, (19871201), vol. 48, no. 1-2, doi:10.1111/j.1574-6968.1987.tb02558.x, ISSN 0378-1097, pages 289 - 294, XP023916710 | |
| OPPOSITION | - M. Jinek et al, "A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity", Science, American Association for the Advancement of Science, (20120817), vol. 337, no. 6096, doi:10.1126/science.1225829, ISSN 00368075, pages 816 - 821, XP055067740 | |
| OPPOSITION | - M. Jinek, K. Chylinski, I. Fonfara, M. Hauer, J. A. Doudna, E. Charpentier, "A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity", Science, US , (20120817), vol. 337, no. 6096, doi:10.1126/science.1225829, ISSN 0036-8075, pages 816 - 821, XP055229606 | |
| OPPOSITION | - Boucher Isabelle, Parrot Marc, Gaudreau Hélène, Champagne Claude P., Vadeboncoeur Christian, Moineau Sylvain, "Novel Food-Grade Plasmid Vector Based on Melibiose Fermentation for the Genetic Engineering of Lactococcus lactis", Applied and environmental microbiology, US , (20021201), vol. 68, no. 12, doi:10.1128/AEM.68.12.6152-6161.2002, ISSN 0099-2240, pages 6152 - 6161, XP093087301 | |
| OPPOSITION | - William S. Reznikoff, "Transposon Tn 5", ANNUAL REVIEW OF GENETICS., ANNUAL REVIEWS INC., US , (20081201), vol. 42, no. 1, doi:10.1146/annurev.genet.42.110807.091656, ISSN 0066-4197, pages 269 - 286, XP055252347 | |
| OPPOSITION | - Bikard David, Marraffini Luciano A., "Control of gene expression by CRISPR-Cas systems", F1000 Prime Reports, (20131101), vol. 5, doi:10.12703/P5-47, pages 1 - 8, XP093087288 | |
| OPPOSITION | - Millen Anne M et al, "Mobile CRISPR/Cas-Mediated Bacteriophage Resistance in Lactococcus lactis", PLoS ONE, (20121211), vol. 7, no. 12, doi:10.1371/journal.pone.0051663, page e51663, XP055864441 | |
| OPPOSITION | - Millen Anne M., Horvath Philippe, Boyaval Patrick, Romero Dennis A., "Mobile CRISPR/Cas-Mediated Bacteriophage Resistance in Lactococcus lactis", PLoS ONE, (20121211), vol. 7, no. 12, doi:10.1371/journal.pone.0051663, pages 1 - 9, XP055864441 | |
| OPPOSITION | - Lee Chang-Ro, Cho Ill, Jeong Byeong, Lee Sang, "Strategies to Minimize Antibiotic Resistance", International Journal of Environmental Research and Public Health, (20130101), vol. 10, no. 9, doi:10.3390/ijerph10094274, pages 4274 - 4305, XP093087290 | |
| OPPOSITION | - Hagen Richter, Lennart Randau, André Plagens, "Exploiting CRISPR/Cas: Interference Mechanisms and Applications", International Journal of Molecular Sciences, (20130101), vol. 14, no. 7, doi:10.3390/ijms140714518, pages 14518 - 14531, XP055153313 | |
| OTHER | - Millen Anne M., Horvath Philippe, Boyaval Patrick, Romero Dennis A., "Mobile CRISPR/Cas-Mediated Bacteriophage Resistance in Lactococcus lactis", PLoS ONE, Public Library of Science, (20121211), vol. 7, no. 12, doi:10.1371/journal.pone.0051663, page e51663, XP055864441 | |
| SEARCH | - BIKARD DAVID ET AL, "CRISPR Interference Can Prevent Natural Transformation and Virulence Acquisition during In Vivo Bacterial Infection", CELL HOST & MICROBE, (20120816), vol. 12, no. 2, doi:10.1016/J.CHOM.2012.06.003, ISSN 1931-3128, pages 177 - 186, XP028934538 [Y] 1-16 * the whole document * | |
| SEARCH | - RAN F ANN ET AL, "Genome engineering using the CRISPR-Cas9 system", NATURE PROTO, NATURE PUBLISHING GROUP, GB, (20131101), vol. 8, no. 11, doi:10.1038/NPROT.2013.143, ISSN 1750-2799, pages 2281 - 2308, XP009174668 [A] 1-16 * the whole document * | |
| SEARCH | - R. SAPRANAUSKAS ET AL, "The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli", NUCLEIC ACIDS RESEARCH, (20110803), vol. 39, no. 21, doi:10.1093/nar/gkr606, ISSN 0305-1048, pages 9275 - 9282, XP055265024 [Y] 1-16 * the whole document * | |
| SEARCH | - MART KRUPOVIC ET AL, "Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity", BMC BIOLOGY, BIOMED CENTRAL, LONDON, GB, GB, (20140519), vol. 12, no. 1, doi:10.1186/1741-7007-12-36, ISSN 1741-7007, page 36, XP021188194 [PX] 1-16 * the whole document * | |
