IP Verse

Genome Identification System - EP3144672

The patent EP3144672 was granted to Cosmosid on Aug 22, 2018. The application was originally filed on Nov 21, 2008 under application number EP16176264A. The patent is currently recorded with a legal status of "Revoked".

EP3144672

COSMOSID
Application Number
EP16176264A
Filing Date
Nov 21, 2008
Status
Revoked
Oct 22, 2021
Publication Date
Aug 22, 2018
External Links
Slate, Register, Google Patents

Patent Summary

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JAMES POOLEMay 17, 2019BUHLERADMISSIBLE

Patent Citations (12) New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePublication Number
DESCRIPTIONEP0512767
DESCRIPTIONEP0515484
DESCRIPTIONUS2007263163
DESCRIPTIONUS4923978
DESCRIPTIONUS5057426
DESCRIPTIONWO9513368
DESCRIPTIONWO9618731
DESCRIPTIONWO9710331
OPPOSITIONUS2004023209
OPPOSITIONUS2008206767
OPPOSITIONWO2009085473
SEARCHUS2002120408

Non-Patent Literature (NPL) Citations (27) New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference Text
OPPOSITION- Anonymous, "Genome Sequencer FLX Operator's Manual", Roche Diagnostics, (20081000), pages 3 - 62, XP055600750
OPPOSITION- Anonymous, "Genome Sequencer System Data Analysis Software Manual, software Version 2.0.00", Roche Diagnostics, (20081000), pages 3 - 576, XP055600757
OPPOSITION- Cathy A. Petti, "Detection and Identification of Microorganisms by Gene Amplification and Sequencing", Clinical Infectious Diseases, (20070302), vol. 44, pages 1108 - 1114, XP055600730
OPPOSITION- DRMANAC et al., "SEQUENCING BY HYBRIDIZATION (SBH): ADVANTAGES, ACHIEVEMENTS, AND OPPORTUNITIES", Advances in Biochemical Engineering/Biotechnology, (20020000), vol. 77, pages 75 - 101, XP009059927
OPPOSITION- Marcel MARGULIES et al., "Chapter 5 - The 454 Life Sciences Picoliter Sequencing System", Marcel MARGULIES et al., Keith R. Mitchelson, PERSPECTIVES IN BIOANALYSIS, Elsevier, (20070000), vol. 2, pages 153 - 186, XP055600762
OPPOSITION- Sundquist Andreas; et al.,, "Bacterial flora-typing with targeted, chip-based Pyrosequencing", BMC Microbiology, (20071130), vol. 7, no. 1, page 108, XP021033249
OPPOSITION- JORDAN et al., "Use of Pyrosequencing of 16S rRNA Fragments to Differentiate between Bacteria Responsible for Neonatal Sepsis", J. Mol. Diagn., (20050000), vol. 7, pages 105 - 110, XP055600733
OPPOSITION- Paul M Lizardi, "Next-generation sequencing-by-hybridization", Nature Biotech, (20080600), vol. 26, no. 6, pages 649 - 650, XP055154438
OPPOSITION- PIHLAK et al., "Rapid genome sequencing with short universal tiling probes", Nature Biotech, (20080525), vol. 26, no. 6, pages 676 - 684, XP002601637
OPPOSITION- SHENDURE et al., "Next-generation DNA sequencing", Nature Biotechnology, (20081009), vol. 26, no. 10, pages 1135 - 1145, XP002572506
OPPOSITION- MUNCH et al., "Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics", Systematic Biology, (20081000), vol. 57, no. 5, pages 750 - 757, XP055600744
OPPOSITION- WILKINSON, "Bayesian methods in bioinformatics and computational systems biology", Briefings in Bioinformatics, (20070412), vol. 8, no. 2, pages 109 - 16, XP055048919
OPPOSITION- LINDNER et al., "HiLive - Real-Time Mapping of Illumina Reads while Sequencing", Bioinformatics, (20161219), vol. 33, no. 6, pages 917 - 919, XP055600765
OPPOSITION- LIU et al., "Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers", Nucleic Acids Research, (20080822), vol. 36, no. 18, page e120, XP055135796
OPPOSITION- COLE et al., "The Ribosomal Database Project: improved alignments and new tools for rRNA analysis", Nucleic Acids Research, (20081112), vol. 37, pages D141 - D145, XP055337924
OPPOSITION- WHITEFORD et al., "An analysis of the feasibility of short read sequencing", Nucleic Acids Research, (20050000), vol. 33, no. 19, pages e171-1 - E171-6, XP002517282
OPPOSITION- TAUSCH et al., "PathoLive - Real time pathogen identification from metagenomic Illumina datasets", bioRxiv, (20180831), URL: https://www.biorxiv.org/content/biorxiv/early/2018/08/31/402370.full.pdf, XP055600767
OPPOSITION- LI et al., "MAPPING SHORT DNA SEQUENCING READS AND CALLING VARIANTS USING MAPPING QUALITY SCORES", Genome Research, (20080800), vol. 18, pages 1851 - 1858, XP001503357
OPPOSITION- BERTHET et al., "Massively parallel pathogen identification using high-density microarrays", Microbial Biotechnology, (20071122), vol. 1, no. 1, pages 79 - 86, XP055600738
OPPOSITION- WANG et al., "Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy", Applied and Environmental Microbiology,, (20070622), vol. 73, no. 16, pages 5261 - 5267, XP055154006
OPPOSITION- LUNA et al., "DNA Pyrosequencing-Based Bacterial Pathogen Identification in a Pediatric Hospital Setting", Journal of Clinical Microbiology, (20070900), vol. 45, no. 9, pages 2985 - 2992, XP008150383
OPPOSITION- ROSEN et al., "Metagenome Fragment Classification Using -Mer Frequency Profiles", Advances in Bioinformatics, (20081116), vol. 2008, pages 1 - 12, XP055547531
OPPOSITION- ROUGEMONT et al., "Probabilistic base calling of Solexa sequencing data", BMC Bioinformatics, (20081013), vol. 9, page 431, XP021041822
OPPOSITION- Liu Zhandong; Venkatesh Santosh S; Maley Carlo C, "Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples", BMC Genomics, (20081030), vol. 9, page 509, XP021048024
OPPOSITION- WIESINGER-MAYR et al., "Identification of human pathogens isolated from blood using microarray hybridisation and signal pattern recognition", BMC Microbiology, (20070814), vol. 7, no. 1, page 78, XP021028198
OPPOSITION- JAING et al., "A Functional Gene Array for Detection of Bacterial Virulence Elements", PLoS ONE, (20080514), vol. 3, no. 5, page e2163, XP055600741
SEARCH- ZHU J ET AL, "BAYESIAN ADAPTIVE SEQUENCE ALIGNMENT ALGORITHMS", BIOINFORMATICS, OXFORD UNIVERSITY PRESS, SURREY, GB, (19980101), vol. 14, no. 1, doi:10.1093/BIOINFORMATICS/14.1.25, ISSN 1367-4803, pages 25 - 39, XP002950383 [A] 1-15 * the whole document *

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