IP Verse

Methods And Applications Of Gene Fusion Detection In Cell-Free Dna Analysis - EP3359695

EP3359695

GUARDANT HEALTH
Application Number
EP16854550A
Filing Date
Oct 10, 2016
Status
Opposition Rejected
Mar 10, 2023
Grant Date
Apr 15, 2020
External Links
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The patent EP3359695B1 was granted to Guardant Health on Apr 15, 2020 following the initial filing on Oct 10, 2016 under the application number EP16854550A . The current legal status of the patent is Opposition Rejected.

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Patent Citations New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePatent NumberPatent Link
DESCRIPTIONUS2006024681
DESCRIPTIONUS2006292611
DESCRIPTIONUS2007114362
DESCRIPTIONUS2009026082
DESCRIPTIONUS2010300559
DESCRIPTIONUS2010300895
DESCRIPTIONUS2010301398
DESCRIPTIONUS2010304982
DESCRIPTIONUS2011009278
DESCRIPTIONUS2015142328
DESCRIPTIONUS4683195
DESCRIPTIONUS4683202
DESCRIPTIONUS4988617
DESCRIPTIONUS5242794
DESCRIPTIONUS5494810
DESCRIPTIONUS6210891
DESCRIPTIONUS6306597
DESCRIPTIONUS6582938
DESCRIPTIONUS6828100
DESCRIPTIONUS6833246
DESCRIPTIONUS6911345
DESCRIPTIONUS7232656
DESCRIPTIONUS7598035
DESCRIPTIONUS7835871
DESCRIPTIONUS7960120
INTERNATIONAL-SEARCH-REPORTUS2009202999
INTERNATIONAL-SEARCH-REPORTUS2014222443
OPPOSITIONUS2015142328
OPPOSITIONWO2017062970
SEARCHUS2015142328

Non-Patent Literature (NPL) Citations New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference TextLink
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INTERNATIONAL-SEARCH-REPORT- THIEME, S et al., "Genome Fusion Detection: a Novel Method to Detect Fusion Genes from SNP-Array Data.", Bioinformatics, (20130122), vol. 29, no. 6, pages 671 - 677, XP055376132 [A] 1-35 * ; page 672, column 2, paragraphs 1-2; page 673, column 2, paragraph 1; page 673, column 1, paragraph 6 - column 2, paragraph 1; page 674, column 1, paragraph 6; page 674, column 2, paragraph 2; page 675, column 1, paragraph 2; column 2, paragraph 2; paqe 676, column 1, paragraph 1; figure 1B; DOI: 1 *
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INTERNATIONAL-SEARCH-REPORT- MCPHERSON, A et al., "DeFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.", PLoS Computational Biology., (20110519), vol. 7, no. 5, pages 1 - 16, XP055376136 [A] 1-23 * ; page 2, column 2, paragraph 3; DOI: 10.1371/journal.pcbi.1001138. *
OPPOSITION- Hebert Paul D. N., Alina Cywinska, Shelley L Ball, Jeremy R Dewaard, "Biological identifications through DNA barcodes", Proc. R. Soc. Lond. B, (20030108), vol. 270, pages 313 - 321, XP055976427-
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OPPOSITION- Jianmin Wang, Et Al., "CREST maps somatic structural variation in cancer genomes with base-pair resolution", Nature Methods, Nature Publishing Group US, New York, New York, (20110612), vol. 8, no. 8, doi:10.1038/nmeth.1628, ISSN 1548-7091, pages 652 - 654, XP055376134
OPPOSITION- Q. Wang, Xia J., Jia P., Pao W., Zhao Z., "Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives", Briefings in Bioinformatics, OXFORD UNIVERSITY PRESS, OXFORD., GB, GB , (20130701), vol. 14, no. 4, doi:10.1093/bib/bbs044, ISSN 1467-5463, pages 506 - 519, XP055522754
OPPOSITION- Sindi S., Helman E., Bashir A., Raphael B. J., "A geometric approach for classification and comparison of structural variants", Bioinformatics, Oxford university press , Surrey, GB, GB , (20090615), vol. 25, no. 12, doi:10.1093/bioinformatics/btp208, ISSN 1367-4803, pages i222 - i230, XP055879671
OPPOSITION- T. Rausch, T. Zichner, A. Schlattl, A. M. Stutz, V. Benes, J. O. Korbel, "DELLY: structural variant discovery by integrated paired-end and split-read analysis", Bioinformatics, Oxford university press , Surrey, GB, GB , (20120915), vol. 28, no. 18, doi:10.1093/bioinformatics/bts378, ISSN 1367-4803, pages i333 - i339, XP055340997
OPPOSITION- J. Schroder, A. Hsu, S. E. Boyle, G. Macintyre, M. Cmero, R. W. Tothill, R. W. Johnstone, M. Shackleton, A. T. Papenfuss, "Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads", Bioinformatics, Oxford university press , Surrey, GB, GB , (20140415), vol. 30, no. 8, doi:10.1093/bioinformatics/btt767, ISSN 1367-4803, pages 1064 - 1072, XP055233373
OPPOSITION- Zhao Hui, Zhao Fangqing, "BreakSeek: a breakpoint-based algorithm for full spectral range INDEL detection", Nucleic Acids Research, Oxford University Press, GB, GB , (20150818), vol. 43, no. 14, doi:10.1093/nar/gkv605, ISSN 0305-1048, pages 6701 - 6713, XP055976541
OPPOSITION- Quinlan A. R., Clark R. A., Sokolova S., Leibowitz M. L., Zhang Y., Hurles M. E., Mell J. C., Hall I. M., "Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome", Genome Research, Cold Spring Harbor Laboratory Press, US, US , (20100501), vol. 20, no. 5, doi:10.1101/gr.102970.109, ISSN 1088-9051, pages 623 - 635, XP055792414
OPPOSITION- SUZUKI et al., "ClipCrop: a tool for detecting structural variations with single-base resolution using soft- clipping information", BMC Bioinformatics, (20111205), vol. 12, doi:10.1186/1471-2105-12-S14-S7, XP021111527
SEARCH- J. SCHRODER ET AL, "Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads", BIOINFORMATICS., GB, (20140102), vol. 30, no. 8, doi:10.1093/bioinformatics/btt767, ISSN 1367-4803, pages 1064 - 1072, XP055233373 [X] 1-5,9,10 * abstract * * page 1065, column 2, paragraph 1 * * Sections 2.1, 2.2, 2.3 * * figure 1 * [A] 11-15 [I] 6-8

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