IP Verse

Compositions And Methods For Accurately Identifying Mutations - EP3363901

The patent EP3363901 was granted to Fred Hutchinson Cancer Center on Dec 30, 2020. The application was originally filed on Feb 15, 2013 under application number EP18150361A. The patent is currently recorded with a legal status of "Granted And Under Opposition".

EP3363901

FRED HUTCHINSON CANCER CENTER
Application Number
EP18150361A
Filing Date
Feb 15, 2013
Status
Granted And Under Opposition
Nov 27, 2020
Grant Date
Dec 30, 2020
External Links
Slate, Register, Google Patents

Patent Summary

Patent Family

Patent Family

Patent Oppositions (4)

Patent oppositions filed by competitors challenge the validity of a granted patent. These oppositions are typically based on claims of prior art, lack of novelty, or non-obviousness. They are a key part of the process for determining a patent's strength and enforceability.

CompanyOpposition DateRepresentativeOpposition Status

Get instant alerts for new oppositions and patent status changes

GRUNECKER PATENT UND RECHTSANWALTE PARTG MBBSep 30, 2021GRUNECKERADMISSIBLE
GRUNECKER PATENT UND RECHTSANWALTE PARTG MBBSep 30, 2021GRUNECKER PATENTADMISSIBLE
JAMES POOLESep 30, 2021CARPMAELS & RANSFORDADMISSIBLE
STRAWMANSep 30, 2021CMS CAMERON MCKENNA NABARRO OLSWANGADMISSIBLE

Patent Citations (34) New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePublication NumberPublication Link
DESCRIPTIONUS2009099041
DESCRIPTIONUS2010227329
DESCRIPTIONUS6143496
DESCRIPTIONUS6833246
DESCRIPTIONUS7754429
DESCRIPTIONWO0018957
DESCRIPTIONWO2006008413
DESCRIPTIONWO9844151
EXAMINATIONWO2009152928
EXAMINATIONWO2010126614
EXAMINATIONWO2010127186
EXAMINATIONWO2012038839
OPPOSITIONDE102008025656
OPPOSITIONEP2814959
OPPOSITIONUS5308751
OPPOSITIONWO2004065582
OPPOSITIONWO2005042759
OPPOSITIONWO2008093098
OPPOSITIONWO2009036525
OPPOSITIONWO2009152928
OPPOSITIONWO2010126614
OPPOSITIONWO2010127186
OPPOSITIONWO2012038839
OPPOSITIONWO2012142213
OPPOSITIONWO2012148477
OPPOSITIONWO2013123442
OPPOSITIONWO2013138510
OPPOSITIONWO2013142389
OPPOSITIONWO9844151
SEARCHDE102008025656
SEARCHWO2005042759
SEARCHWO2009036525
SEARCHWO2012148477
SEARCHWO9844151

Non-Patent Literature (NPL) Citations (30) New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference TextLink
DESCRIPTION- BIELAS et al., Proc. Nat'l Acad. Sci. U.S.A., (20080000), vol. 103, pages 18238 - 42-
DESCRIPTION- BIELAS; LOEB, Nat. Methods, (20050000), vol. 2, pages 285 - 90-
DESCRIPTION- "Guide to Molecular Cloning Techniques", Berger and Kimmel,, Methods in Enzymology, Academic Press, Inc., (19870000), vol. 152-
DESCRIPTION- JONES et al., Proc. Nat'l. Acad. Sci. U.S.A., (20080000), vol. 105, pages 4283 - 88-
DESCRIPTION- KINDE et al., Proc. Nat'l. Acad. Sci. U.S.A., vol. 108-
DESCRIPTION- KRAYTSBERG et al., Methods, (20080000), vol. 46, pages 269 - 73-
DESCRIPTION- NIEDRINGHAUS et al., Anal. Chern., (20110000), vol. 83, page 4327-
DESCRIPTION- SAMBROOK et al., Molecular Cloning: A Laboratory Manual, 2nd Ed.,, Cold Spring Harbor Laboratory, (19890000), pages 1 - 3-
DESCRIPTION- ZHENG et al., Mutat. Res., (20060000), vol. 599, pages 11 - 20-
EXAMINATION- I. Kinde ET AL, "Detection and quantification of rare mutations with massively parallel sequencing", Proceedings of the National Academy of Sciences, (20110517), vol. 108, no. 23, doi:10.1073/pnas.1105422108, ISSN 0027-8424, pages 9530 - 9535, XP055164202
EXAMINATION- K. Shiroguchi ET AL, "Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, US, (20120109), vol. 109, no. 4, doi:10.1073/pnas.1118018109, ISSN 0027-8424, pages 1347 - 1352, XP055428301
EXAMINATION- M. W. Schmitt ET AL, "Detection of ultra-rare mutations by next-generation sequencing", Proceedings of the National Academy of Sciences, (20120801), vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 0027-8424, pages 14508 - 14513, XP055161683
EXAMINATION- J. A. Casbon ET AL, "A method for counting PCR template molecules with application to next-generation sequencing", Nucleic Acids Research, (20110413), vol. 39, no. 12, doi:10.1093/nar/gkr217, ISSN 0305-1048, pages 1 - 8, XP055164201
OPPOSITION- Anonymous, "Indexing and Barcoding for Illumina NextGen Sequencing (ELK 10/2011)", UMass Chan Medical School Lab Guidance Note, (20111001), pages 1 - 5, UMass Chan Medical School Lab Guidance Note, URL: https://www.umassmed.edu/contentassets/5ea3699998c442bb8c9b1a3cf95dbb24/indexing-and-barcoding-for-illumina-nextgen-sequencing.pdf, (20211021), XP055853634-
OPPOSITION- Mike S. Son, Ronald K. Taylor, "Preparing DNA Libraries for Multiplexed Paired-End Deep Sequencing for Illumina GA Sequencers", Current Protocols in Microbiology, Hoboken, NJ, USA, John Wiley & Sons, Inc., doi:10.1002/9780471729259.mc01e04s20, ISBN 978-0-471-72925-9, XP055239835
OPPOSITION- HUG et al., "Measurement of the number of molecules of a single mRNA species in a complex mRNA preparation", Journal of Theoretical Biology, (20030421), vol. 221, no. 4, doi:10.1006/jtbi.2003.3211, pages 615 - 624, XP055569630
OPPOSITION- BENTLEY DAVID R ET AL, "Accurate whole human genome sequencing using reversible terminator chemistry.", Nature, Macmillan Journals Ltd., etc., London, London, (20081106), vol. 456, no. 7218, doi:10.1038/nature07517, ISSN 0028-0836, pages 53 - 59, XP002558230
OPPOSITION- I. Kinde et al, "Detection and quantification of rare mutations with massively parallel sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20110607), vol. 108, no. 23, doi:10.1073/pnas.1105422108, ISSN 00278424, pages 9530 - 9535, XP055164202
OPPOSITION- I. Kinde, J. Wu, N. Papadopoulos, K. W. Kinzler, B. Vogelstein, "Detection and quantification of rare mutations with massively parallel sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20110607), vol. 108, no. 23, doi:10.1073/pnas.1105422108, ISSN 00278424, pages 9530 - 9535, XP055164202
OPPOSITION- KINDE et al., "Detection and quantification of rare mutations with massively parallel sequencing", PNAS, (20110607), vol. 108, no. 23, doi:10.1073/pnas.1105422108, pages 9530 - 9535, XP055815700
OPPOSITION- K. Shiroguchi, T. Z. Jia, P. A. Sims, X. S. Xie, "Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes", Proceedings of the National Academy of Sciences, National Academy of Sciences, US, US, (20120124), vol. 109, no. 4, doi:10.1073/pnas.1118018109, ISSN 0027-8424, pages 1347 - 1352, XP055428301
OPPOSITION- SHIROGUCHI et al., "Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes", PNAS, (20120124), vol. 109, no. 4, doi:10.1073/pnas.1118018109, pages 1347 - 1352, XP055428301
OPPOSITION- M. W. Schmitt et al, "Detection of ultra-rare mutations by next-generation sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20120904), vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 00278424, pages 14508 - 14513, XP055161683
OPPOSITION- SCHMITT et al., "Detection of ultra-rare mutations by next-generation sequencing", PNAS, (20120904), vol. 109, no. 36, doi:10.1073/pnas.1208715109, pages 14508 - 14513, XP055161683
OPPOSITION- Schmitt M. W. et al, "Detection of ultra-rare mutations by next-generation sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20120904), vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 00278424, pages 14508 - 14513, XP055161683
OPPOSITION- J. A. Casbon, R. J. Osborne, S. Brenner, C. P. Lichtenstein, "A method for counting PCR template molecules with application to next-generation sequencing", Nucleic Acids Research, Oxford University Press, GB, GB, (20110701), vol. 39, no. 12, doi:10.1093/nar/gkr217, ISSN 0305-1048, pages 1 - 8, XP055164201
OPPOSITION- Kircher M, Sawyer S, Meyer M., "Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform.", NUCLEIC ACIDS RESEARCH, Oxford University Press, GB, GB, (20120101), vol. 40, no. 1, doi:10.1093/nar/gkr771, ISSN 1362-4962, pages e3 - e3-8, XP002751968
OPPOSITION- KAUR M, MAKRIGIORGOS G M, "Novel amplification of DNA in a hairpin structure: towards a radical elimination of PCR errors from amplified DNA.", Nucleic Acids Research, Oxford University Press, GB, GB, (20030315), vol. 31, no. 6, doi:10.1093/nar/gng026, ISSN 0305-1048, pages e26/1 - E26/7, XP002394810
OPPOSITION- MILBURY et al., "PCR-Based Methods for the Enrichment of Minority Alleles and Mutations", Clinical Chemistry, (20090000), vol. 55, no. 4, doi:10.1373/clinchem.2008.113035, pages 632 - 640, XP055021046
SEARCH- HUBERT HUG ET AL, "Measurement of the number of molecules of a single mRNA species in a complex mRNA preparation.", JOURNAL OF THEORETICAL BIOLOGY, (20030421), vol. 221, no. 4, ISSN 0022-5193, pages 615 - 624, XP055017448 [A] 1-15 * the whole document *

Download Citation Report

Get a free citation report including examiner, opposition, and international search citations.

Get Citation Report

Dossier Documents

The dossier documents provide a comprehensive record of the patent’s prosecution history - including filings, correspondence, and decisions made by patent offices - and are crucial for understanding the patent’s legal journey and any challenges it may have faced during examination.

  • Date

    Description

  • Get instant alerts for new documents