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Methods Of Mass Spectrometry Quantitation Using Cleavable Isobaric Tags And Neutral Loss Fragmentation - EP3425405

The patent EP3425405 was granted to Thermo Finnigan on Mar 10, 2021. The application was originally filed on Jul 6, 2018 under application number EP18182241A. The patent is currently recorded with a legal status of "Granted And Under Opposition".

EP3425405

THERMO FINNIGAN
Application Number
EP18182241A
Filing Date
Jul 6, 2018
Status
Granted And Under Opposition
Feb 5, 2021
Publication Date
Mar 10, 2021
External Links
Slate, Register, Google Patents

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ROCHEDec 10, 2021ALTMANN STOSSEL DICK PATENTANWALTE PARTG MBBWITHDRAWN

Patent Citations (13) New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePublication Number
OPPOSITIONEP1918714
OPPOSITIONUS2004157344
OPPOSITIONUS2016139140
OPPOSITIONWO2006084130
OPPOSITIONWO2009153577
OPPOSITIONWO2011091338
OPPOSITIONWO2013102786
OPPOSITIONWO2013112677
OPPOSITIONWO2015091876
OPPOSITIONWO2017098029
OPPOSITIONWO2018141821
SEARCHEP1918714
SEARCHWO2006084130

Non-Patent Literature (NPL) Citations (18) New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference Text
DESCRIPTION- ERICKSON, BRIAN K. et al., Analytical chemistry, (20150000), vol. 87, no. 2, pages 1241 - 1249
DESCRIPTION- KARP, NATASHA A. et al., Molecular & Cellular Proteomics, (20100000), vol. 9, no. 9, pages 1885 - 1897
DESCRIPTION- SAVITSKI, MIKHAIL M. et al., Analytical chemistry, (20110000), vol. 83, no. 23, pages 8959 - 8967
DESCRIPTION- STURM, ROBERT M.; CHRISTOPHER B. LIETZ; LINGJUN LI., Rapid Communications in Mass Spectrometry, (20140000), vol. 28, no. 9, pages 1051 - 1060
DESCRIPTION- TING, LILY et al., Nature methods, (20110000), vol. 8, no. 11, pages 937 - 940
DESCRIPTION- WENGER, CRAIG D. et al., Nature methods, (20110000), vol. 8, no. 11, pages 933 - 935
OPPOSITION- SCHREIBER, EMANUEL M., "improving quantitative accuracy and precision of isobaric labeling strategies for quantitative proteomics using multistage (MS3) mass spectrometry", American Laboratory, (20130000), pages 10 - 13, XP055909724
OPPOSITION- Yali Lu, Xiao Zhou, Paul M. Stemmer, Gavin E. Reid, "Sulfonium Ion Derivatization, Isobaric Stable Isotope Labeling and Data Dependent CID- and ETD-MS/MS for Enhanced Phosphopeptide Quantitation, Identification and Phosphorylation Site Characterization", Journal of the American society for mass spectrometry, Elsevier science INC, US, US , (20120401), vol. 23, no. 4, doi:10.1007/s13361-011-0190-0, ISSN 1044-0305, pages 577 - 593, XP055675884
OPPOSITION- Nie Shuai; Fhaner Cassie J.; Liu Sichang; Peake David; Kiyonami Reiko; Huang Yingying; Reid Gavin E., "Characterization and multiplexed quantification of derivatized aminophospholipids", International Journal of Mass Spectrometry, Elsevier science Publishers , Amsterdam, NL, NL , (20150713), vol. 391, doi:10.1016/j.ijms.2015.07.002, ISSN 1387-3806, pages 71 - 81, XP029326732
OPPOSITION- Martin Wühr, Wilhelm Haas, Graeme C. Mcalister, Leonid Peshkin, Ramin Rad, Marc W. Kirschner, Steven P. Gygi, "Accurate Multiplexed Proteomics at the MS2 Level Using the Complement Reporter Ion Cluster", Analytical Chemistry, American Chemical Society, US, US , (20121106), vol. 84, no. 21, doi:10.1021/ac301962s, ISSN 0003-2700, pages 9214 - 9221, XP055362885
OPPOSITION- Brian K. Erickson, Mark P. Jedrychowski, Graeme C. Mcalister, Robert A. Everley, Ryan Kunz, Steven P. Gygi, "Evaluating Multiplexed Quantitative Phosphopeptide Analysis on a Hybrid Quadrupole Mass Filter/Linear Ion Trap/Orbitrap Mass Spectrometer", Analytical Chemistry, American Chemical Society, US, US , (20150120), vol. 87, no. 2, doi:10.1021/ac503934f, ISSN 0003-2700, pages 1241 - 1249, XP055522112
OPPOSITION- Navin Rauniyar, John R. Yates, "Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics", JOURNAL OF PROTEOME RESEARCH, American Chemical Society, (20141205), vol. 13, no. 12, doi:10.1021/pr500880b, ISSN 1535-3893, pages 5293 - 5309, XP055521881
OPPOSITION- Han Hongling, Pappin Darryl J., Ross Philip L., Mcluckey Scott A., "Electron Transfer Dissociation of iTRAQ Labeled Peptide Ions", JOURNAL OF PROTEOME RESEARCH, American Chemical Society, (20080905), vol. 7, no. 9, doi:10.1021/pr8001113, ISSN 1535-3893, pages 3643 - 3648, XP055909685
OPPOSITION- Lily Ting, Rad Ramin, Gygi Steven P, Haas Wilhelm, "MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics", Nature Methods, Nature Pub. Group, (20111002), vol. 8, no. 11, doi:10.1038/nmeth.1714, ISSN 15487091, pages 937 - 940, XP055076871
SEARCH- BRIAN K. ERICKSON ET AL, "Evaluating Multiplexed Quantitative Phosphopeptide Analysis on a Hybrid Quadrupole Mass Filter/Linear Ion Trap/Orbitrap Mass Spectrometer", ANALYTICAL CHEMISTRY, US, (20150106), vol. 87, no. 2, doi:10.1021/ac503934f, ISSN 0003-2700, pages 1241 - 1249, XP055522112 [AD] 1-15 * page 1243, column 1, paragraph 2; figures 1-3 * * page 1248, column 2, paragraph 2 *
SEARCH- NAVIN RAUNIYAR ET AL, "Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics", JOURNAL OF PROTEOME RESEARCH, (20141104), vol. 13, no. 12, doi:10.1021/pr500880b, ISSN 1535-3893, pages 5293 - 5309, XP055521881 [A] 1-15 * figures 2-4 *
SEARCH- LILY TING ET AL, "MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics", NATURE METHODS, New York, (20111002), vol. 8, no. 11, doi:10.1038/nmeth.1714, ISSN 1548-7091, pages 937 - 940, XP055521887 [AD] 1-15 * figure 1 *
SEARCH- LILY TING ET AL, "MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics (Supplementary Information)", NATURE METHODS, (20111002), vol. 8, no. 11, doi:10.1038/nmeth.1714, ISSN 1548-7091, pages 937 - 940, XP055076879 [AD] 1-15

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