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Methods Of Analysing Cell Free Polynucleotides - EP3842551

The patent EP3842551 was granted to Guardant Health on Nov 1, 2023. The application was originally filed on Sep 4, 2013 under application number EP21155582A. The patent is currently recorded with a legal status of "Granted And Under Opposition".

EP3842551

GUARDANT HEALTH
Application Number
EP21155582A
Filing Date
Sep 4, 2013
Status
Granted And Under Opposition
Sep 29, 2023
Publication Date
Nov 1, 2023
External Links
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MARGARET DIXONAug 1, 2024MEWBURN ELLISADMISSIBLE

Patent Citations (14) New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePublication Number
DESCRIPTIONUS2001053519
DESCRIPTIONUS2003152490
DESCRIPTIONUS2011160078
DESCRIPTIONUS6582908
DESCRIPTIONUS7537897
OPPOSITIONUS2012020537
OPPOSITIONUS2012071331
OPPOSITIONWO2012042374
OPPOSITIONWO2012142213
OPPOSITIONWO2012148477
OPPOSITIONWO2013123442
OPPOSITIONWO2013142389
SEARCHUS8209130
SEARCHWO2008154317

Non-Patent Literature (NPL) Citations (24) New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference Text
OPPOSITION- D21 - Declaration of Dr Christopher Mason, Ph.D.
OPPOSITION- D26 - Declaration of Prof. Jay Shendure
OPPOSITION- D3a - Proof of publication date of D3 (article) https://www.pnas.org/content/109/36/14508/tab-article-info
OPPOSITION- D3b - Proof of publication date of D3 (supplementary information) https://www.pnas.org/content/suppl/2012/08/01/1208715109.DCSupplemental
OPPOSITION- D3c - Proof of publication date of D3 (PubMed) https://www.ncbi.nlm.nih.gov/pubmed/22853953
OPPOSITION- Samantha Perakis, Martina Auer, Jelena Belic, Ellen Heitzer, "Chapter Three - Advances in Circulating Tumor DNA Analysis", Samantha Perakis, Martina Auer, Jelena Belic, Ellen Heitzer, Gregory S. Makowski, Advances in Clinical Chemistry, Elsevier, (20170101), vol. 80, pages 73 - 153, doi:10.1016/bs.acc.2016.11.005, ISBN 978-0-12-812178-8, XP009559006
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OPPOSITION- Teemu Kivioja, Anna Vähärautio, Kasper Karlsson, Martin Bonke, Martin Enge, Sten Linnarsson, Jussi Taipale, "Counting absolute numbers of molecules using unique molecular identifiers.", NATURE METHODS, Nature Publishing Group, GB, GB , (20120101), vol. 9, no. 1, doi:10.1038/nmeth.1778 , ISSN 1548-7105, pages 72 - 74, XP002722751
OPPOSITION- Scott R Kennedy, Michael W Schmitt, Edward J Fox, Brendan F Kohrn, Jesse J Salk, Eun Hyun Ahn, Marc J Prindle, Kawai J Kuong, Jiang-Cheng Shen, Rosa-Ana Risques, Lawrence A Loeb, "Detecting ultralow-frequency mutations by Duplex Sequencing", Nature Protocols, Nature Publishing Group, GB, GB , vol. 9, no. 11, doi:10.1038/nprot.2014.170, ISSN 1754-2189, pages 2586 - 2606, XP055390095
OPPOSITION- Diehl, F. ; Schmidt, K. ; Durkee, K.H. ; Moore, K.J. ; Goodman, S.N. ; Shuber, A.P. ; Kinzler, K.W. ; Vogelstein, B., "Analysis of Mutations in DNA Isolated From Plasma and Stool of Colorectal Cancer Patients", Gastroenterology, W.B. Saunders, (20080801), vol. 135, no. 2, doi:10.1053/j.gastro.2008.05.039, ISSN 0016-5085, pages 489 - 498.e7, XP023610068
OPPOSITION- Sarah-Jane Dawson, Dana W.Y. Tsui, Muhammed Murtaza, Heather Biggs, Oscar M. Rueda, Suet-Feung Chin, Mark J. Dunning, Davina Gale, Tim Forshew, Betania Mahler-Araujo, Sabrina Rajan, Sean Humphray, Jennifer Becq, David Halsall, Matthew Wallis, David Bentley, Carlos Caldas, Nitzan Rosenfeld, "Analysis of Circulating Tumor DNA to Monitor Metastatic Breast Cancer", The New England journal of medicine, Massachusetts Medical Society, US, US , (20130328), vol. 368, no. 13, doi:10.1056/NEJMoa1213261, ISSN 0028-4793, pages 1199 - 1209, XP055494258
OPPOSITION- Fan H.C., et al, "Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood.", Proceedings of the National Academy of Sciences (PNAS), National Academy of Sciences, (20081021), vol. 105, no. 42, doi:10.1073/pnas.0808319105, ISSN 0027-8424, pages 16266 - 16271, XP002613056
OPPOSITION- CHIU ROSSA W K, "Noninvasive prenatal diagnosis of fetal chromosomal aneuploidy by massively parallel genomic sequencing of DNA in maternal plasma", Proceedings of the National Academy of Sciences (PNAS), National Academy of Sciences, (20081223), vol. 105, no. 51, doi:10.1073/pnas.0810641105, ISSN 0027-8424, pages 20458 - 20463, XP002620454
OPPOSITION- Glenn K Fu, Hu Jing, Wang Pei-Hua, Fodor Stephen P. A., "Counting individual DNA molecules by the stochastic attachment of diverse labels", PNAS, doi:10.1073/pnas.1017621108, (20110531), pages 9026 - 9031, PNAS, URL: http://www.pnas.org/content/108/22/9026.full.pdf#page=1&view=FitH, (20120123), XP055017200
OPPOSITION- I. Kinde, J. Wu, N. Papadopoulos, K. W. Kinzler, B. Vogelstein, "Detection and quantification of rare mutations with massively parallel sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20110607), vol. 108, no. 23, doi:10.1073/pnas.1105422108, ISSN 00278424, pages 9530 - 9535, XP055164202
OPPOSITION- M. W. Schmitt, S. R. Kennedy, J. J. Salk, E. J. Fox, J. B. Hiatt, L. A. Loeb, "Detection of ultra-rare mutations by next-generation sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20120904), vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 00278424, pages 14508 - 14513, XP055161683
OPPOSITION- James A. Casbon, Robert J. Osborne, Sydney Brenner, and Conrad P. Lichtenstein, "A method for counting PCR template molecules with application to next-generation sequencing", Nucleic Acids Research, Oxford University Press, GB, GB , (20110701), vol. 39, no. 12, doi:10.1093/nar/gkr217, ISSN 0305-1048, pages 1 - 8, XP002666160
OPPOSITION- Cherbas Lucy, Willingham Aarron, Zhang Dayu, Yang Li, Zou Yi, Eads Brian D., Carlson Joseph W., Landolin Jane M., Kapranov Philipp, Dumais Jacqueline, Samsonova Anastasia, Choi Jeong-Hyeon, Roberts Johnny, Davis Carrie A., Tang Haixu, Van Baren Marijke J., Ghosh Srinka, Dobin Alexander, Bell Kim, Lin Wei, Langton Laura, Duff Michael O., Tenney Aaron E., Zaleski Chris, Brent Michael R., Hoskins Roger A., Kaufman Thomas C., Andrews Justen, Graveley Brenton R., Perrimon Norbert, Celniker Susan E., Gingeras Thomas R., Cherbas Peter, "The transcriptional diversity of 25 Drosophila cell lines", Genome Research, Cold Spring Harbor Laboratory Press, US, US , (20110201), vol. 21, no. 2, doi:10.1101/gr.112961.110, ISSN 1088-9051, pages 301 - 314, XP093239547
OPPOSITION- FORSHEW T, ET AL, "Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA.", SCIENCE TRANSLATIONAL MEDICINE, American Association for the Advancement of Science, (20120530), vol. 4, no. 136, doi:10.1126/SCITRANSLMED.3003726, ISSN 1946-6234, pages 1 - 12, XP003030868
OPPOSITION- Rebecca J Leary, Sausen Mark, Kinde Isaac, Papadopoulos Nickolas, Carpten John D, Craig David, O'shaughnessy Joyce, Kinzler Kenneth W, Parmigiani Giovanni, Vogelstein Bert, Diaz, Velculescu Victor E, "Detection of Chromosomal Alterations in the Circulation of Cancer Patients with Whole-Genome Sequencing", SCIENCE TRANSLATIONAL MEDICINE, American Association for the Advancement of Science, (20121128), vol. 4, no. 162, doi:10.1126/scitranslmed.3004742, ISSN 1946-6234, pages 162ra154 - 162ra154, XP055565752
OPPOSITION- J. M. Rizzo, M. J. Buck, "Key Principles and Clinical Applications of "Next-Generation" DNA Sequencing", CANCER PREVENTION RESEARCH, American Association for Cancer Research, United States, United States , (20120701), vol. 5, no. 7, doi:10.1158/1940-6207.CAPR-11-0432, ISSN 1940-6207, pages 887 - 900, XP055486092
OPPOSITION- Gary J.W. Liao, Fiona M.F. Lun, Yama W.L. Zheng, K.C. Allen Chan, Tak Y. Leung, Tze K. Lau, Rossa W.K. Chiu, Y.M. Dennis Lo, "Targeted massively parallel sequencing of maternal plasma DNA permits efficient and unbiased detection of fetal alleles.", Clinical Chemistry, Oxford University Press, US, US , (20110101), vol. 57, no. 1, doi:10.1373/CLINCHEM.2010.154336, ISSN 0009-9147, pages 92 - 101, XP002674771
OPPOSITION- A. J. Sehnert, B. Rhees, D. Comstock, E. De Feo, G. Heilek, J. Burke, R. P. Rava, "Optimal Detection of Fetal Chromosomal Abnormalities by Massively Parallel DNA Sequencing of Cell-Free Fetal DNA from Maternal Blood", Clinical Chemistry, P.B. Hoeber, (20110701), vol. 57, no. 7, doi:10.1373/clinchem.2011.165910, ISSN 00099147, pages 1042 - 1049, XP055035087
SEARCH- M. W. SCHMITT ET AL, "Detection of ultra-rare mutations by next-generation sequencing", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, (20120801), vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 0027-8424, pages 14508 - 14513, XP055161683 [A] 1-15 * page 14509, column l, paragraph l - column r, paragraph 2 * * figure 1 *

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