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Systems And Methods To Detect Rare Mutations And Copy Number Variation - EP4036247

The patent EP4036247 was granted to Guardant Health on Apr 10, 2024. The application was originally filed on Sep 4, 2013 under application number EP22162429A. The patent is currently recorded with a legal status of "Granted And Under Opposition".

EP4036247

GUARDANT HEALTH
Application Number
EP22162429A
Filing Date
Sep 4, 2013
Status
Granted And Under Opposition
Mar 8, 2024
Publication Date
Apr 10, 2024
External Links
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STRAWMANJan 10, 2025FINNEGAN EUROPEADMISSIBLE

Patent Citations (10) New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePublication Number
DESCRIPTIONUS2001053519
DESCRIPTIONUS2003152490
DESCRIPTIONUS2011160078
DESCRIPTIONUS6582908
DESCRIPTIONUS7537897
OPPOSITIONUS2012165202
OPPOSITIONWO2010127186
OPPOSITIONWO2012142213
OPPOSITIONWO2013142389
SEARCHWO2008154317

Non-Patent Literature (NPL) Citations (24) New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference Text
OPPOSITION- D10 - Proprietor’s reply dated 28 November 2024 for EP3591073
OPPOSITION- D11 - Proprietor’s response dated 13 December 2024 for EP3842551
OPPOSITION- D21 - Shendure declaration
OPPOSITION- D7 - European search opinion dated 4 July 2022 EP4036247
OPPOSITION- D8 - Proprietor’s response dated 2 May 2023 for EP4036247
OPPOSITION- Foundation Medicine v Guardant Health
OPPOSITION- Samantha Perakis, Martina Auer, Jelena Belic, Ellen Heitzer, "Chapter Three - Advances in Circulating Tumor DNA Analysis", Advances in Clinical Chemistry, Elsevier, (20170101), vol. 80, pages 73 - 153, doi:10.1016/bs.acc.2016.11.005, ISBN 978-0-12-812178-8, XP009559006
OPPOSITION- Mathias Ehrich; Cosmin Deciu; Tricia Zwiefelhofer; John A. Tynan; Lesley Cagasan; Roger Tim; Vivian Lu; Ron McCullough; Erin McCarthy; Anders O.H. Nygren; Jarrod Dean; Lin Tang; Don Hutchison; Tim Lu; Huiquan Wang; Vach Angkachatchai; Paul Oeth; Charles R. Cantor; Allan Bombard; Dirk van den Boom;, "Noninvasive detection of fetal trisomy 21 by sequencing of DNA in maternal blood: a study in a clinical setting", AMERICAN JOURNAL OF OBSTETRICS & GYNECOLOGY, MOSBY, ST LOUIS, MO, US, US , (20101228), vol. 204, no. 3, doi:10.1016/j.ajog.2010.12.060, ISSN 0002-9378, pages 205.e1 - 205.e11, XP028184664
OPPOSITION- Vermulst Marc, Bielas Jason H, Kujoth Gregory C, Ladiges Warren C, Rabinovitch Peter S, Prolla Tomas A, Loeb Lawrence A, "Mitochondrial point mutations do not limit the natural lifespan of mice", Nature Genetics, Nature Publishing Group US, New York, New York, (20070401), vol. 39, no. 4, doi:10.1038/ng1988, ISSN 1061-4036, pages 540 - 543, XP093254609
OPPOSITION- Scott R Kennedy, Michael W Schmitt, Edward J Fox, Brendan F Kohrn, Jesse J Salk, Eun Hyun Ahn, Marc J Prindle, Kawai J Kuong, Jiang-Cheng Shen, Rosa-Ana Risques, Lawrence A Loeb, "Detecting ultralow-frequency mutations by Duplex Sequencing", Nature Protocols, Nature Publishing Group, GB, GB , vol. 9, no. 11, doi:10.1038/nprot.2014.170, ISSN 1754-2189, pages 2586 - 2606, XP055390095
OPPOSITION- Jia Qi, Xiang Ye, "Cryo-EM structure of a bacteriophage M13 mini variant", Nature Communications, Nature Publishing Group, UK, UK, vol. 14, no. 1, doi:10.1038/s41467-023-41151-7, ISSN 2041-1723, pages 1087 - 1094, XP093254613
OPPOSITION- Haddock Naomi L., Barkal Layla J., Ram-Mohan Nikhil, Kaber Gernot, Chiu Charles Y., Bhatt Ami S., Yang Samuel, Bollyky Paul L., "Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases", Nature Microbiology, Nature Publishing Group, UK, UK , vol. 8, no. 8, doi:10.1038/s41564-023-01406-x, ISSN 2058-5276, pages 1495 - 1507, XP093254604
OPPOSITION- Sarah-Jane Dawson, Dana W.Y. Tsui, Muhammed Murtaza, Heather Biggs, Oscar M. Rueda, Suet-Feung Chin, Mark J. Dunning, Davina Gale, Tim Forshew, Betania Mahler-Araujo, Sabrina Rajan, Sean Humphray, Jennifer Becq, David Halsall, Matthew Wallis, David Bentley, Carlos Caldas, Nitzan Rosenfeld, "Analysis of Circulating Tumor DNA to Monitor Metastatic Breast Cancer", The New England journal of medicine, Massachusetts Medical Society, US, US , (20130328), vol. 368, no. 13, doi:10.1056/NEJMoa1213261, ISSN 0028-4793, pages 1199 - 1209, XP055494258
OPPOSITION- Fan H.C., et al, "Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood.", Proceedings of the National Academy of Sciences (PNAS), National Academy of Sciences, (20081021), vol. 105, no. 42, doi:10.1073/pnas.0808319105, ISSN 0027-8424, pages 16266 - 16271, XP002613056
OPPOSITION- I. Kinde, J. Wu, N. Papadopoulos, K. W. Kinzler, B. Vogelstein, "Detection and quantification of rare mutations with massively parallel sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20110607), vol. 108, no. 23, doi:10.1073/pnas.1105422108, ISSN 00278424, pages 9530 - 9535, XP055164202
OPPOSITION- M. W. Schmitt, S. R. Kennedy, J. J. Salk, E. J. Fox, J. B. Hiatt, L. A. Loeb, "Detection of ultra-rare mutations by next-generation sequencing", Proceedings of the National Academy of Sciences, National Academy of Sciences, (20120904), vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 00278424, pages 14508 - 14513, XP055161683
OPPOSITION- FORSHEW T, ET AL, "Noninvasive identification and monitoring of cancer mutations by targeted deep sequencing of plasma DNA.", SCIENCE TRANSLATIONAL MEDICINE, American Association for the Advancement of Science, (20120530), vol. 4, no. 136, doi:10.1126/SCITRANSLMED.3003726, ISSN 1946-6234, pages 1 - 12, XP003030868
OPPOSITION- Isaac Kinde, Papadopoulos Nickolas, Kinzler Kenneth, Vogelstein Bert, Veitia Reiner, "FAST-SeqS: A Simple and Efficient Method for the Detection of Aneuploidy by Massively Parallel Sequencing", PLoS ONE, Public Library of Science, (20120718), vol. 7, no. 7, doi:10.1371/journal.pone.0041162, ISSN 19326203, page e41162, XP055085154
SEARCH- TONG Y K ET AL, "Diagnostic developments involving cell-free (circulating) nucleic acids", CLINICA CHIMICA ACTA, ELSEVIER BV, AMSTERDAM, NL, vol. 363, no. 1-2, ISSN 0009-8981, (20060101), pages 187 - 196, (20060101), XP027877593 [A] 1-15 * the whole document *
SEARCH[ ] - I. KINDE ET AL, "Detection and quantification of rare mutations with massively parallel sequencing /Supporting Information/", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, (20110517), vol. 108, no. 23, doi:10.1073/pnas.1105422108, ISSN 0027-8424, pages 9530 - 9535, XP055647660 [ ] * page 1, column l, paragraph l - column r, paragraph 1 * * page 2, column l, paragraph 2 - column r, paragraph 1 *
SEARCH- KINDE I. ET AL, "Detection and quantification of rare mutations with massively parallel sequencing", vol. 108, no. 23, doi:10.1073/pnas.1105422108, ISSN 0027-8424, (20110607), pages 9530 - 9535, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, URL: https://www.pnas.org/content/pnas/108/23/9530.full.pdf, XP055855692 [I] 1-15 * page 9531, column l, paragraph 1 - column r, paragraph 1 * * page 9535, column r, paragraph l * * figure 3 *
SEARCH- M. W. SCHMITT ET AL, "Detection of ultra-rare mutations by next-generation sequencing", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, (20120801), vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 0027-8424, pages 14508 - 14513, XP055161683 [I] 1-15 * page 14509, column l, paragraph l - column r, paragraph 2 * * figure 1 *
SEARCH- SCHMITT M. W. ET AL, "Detection of ultra-rare mutations by next-generation sequencing - supporting information", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES, vol. 109, no. 36, doi:10.1073/pnas.1208715109, ISSN 0027-8424, (20120904), URL: https://www.pnas.org/content/pnas/suppl/2012/08/01/1208715109.DCSupplemental/pnas.201208715SI.pdf?targetid=nameddest=STXT, XP055825591
SEARCH- A. NARAYAN ET AL, "Ultrasensitive Measurement of Hotspot Mutations in Tumor DNA in Blood Using Error-Suppressed Multiplexed Deep Sequencing", CANCER RESEARCH, US, (20120715), vol. 72, no. 14, doi:10.1158/0008-5472.CAN-11-4037, ISSN 0008-5472, pages 3492 - 3498, XP055407873 [A] 1-15 * the whole document *

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