Overexpression of N-glycosylation pathway regulators to modulate glycosylation of recombinant proteins

Patent No. US10106829 (titled "Overexpression of N-glycosylation pathway regulators to modulate glycosylation of recombinant proteins") on Dec 11, 2014. The application was issued on Oct 23, 2018.

What is this patent about?

’829 is related to the field of recombinant protein production in mammalian cell cultures, specifically focusing on the post-translational modification of glycoproteins. In the manufacturing of therapeutic monoclonal antibodies, the specific arrangement of sugar molecules, or glycosylation profile, is a critical quality attribute that influences the drug's efficacy, serum clearance, and immune system interaction. A common challenge in the industry is the unwanted accumulation of high mannose glycoforms, which can negatively impact the pharmacokinetic properties of the resulting medicine.

The underlying idea behind ’829 is that the bottleneck in the cellular machinery responsible for processing complex sugars can be bypassed by genetically augmenting the N-glycosylation pathway. Rather than relying on traditional process-based interventions like adjusting pH, temperature, or media chemistry—which often inadvertently reduce overall yield—the invention targets the internal enzymatic capacity of the host cell. By forcing the overexpression of specific enzymes and transporters, the cell is better equipped to convert immature high-mannose structures into mature complex glycans, even at high production titers.

The claims of ’829 focus on a method for regulating high mannose glycoform content by transfecting a mammalian host cell to overexpress at least one of three specific proteins: N-acetyl-glucosaminyltransferase-1 (Mgat1), N-acetyl-glucosaminyltransferase-2 (Mgat2), or the UDP-Galactose transporter (Slc35a2). The claims specifically cover the use of these genetic modifications to ensure that the final recombinant protein maintains a high mannose content of 10% or less, providing a molecular solution to a macroscopic manufacturing problem.

In practice, the invention is implemented by introducing expression vectors into host cells, such as CHO cells, either before or after the cell has been engineered to produce a specific therapeutic protein. The data suggests that overexpressing a combination of these proteins, particularly Mgat1 and Mgat2, creates a synergistic effect that significantly drives down the presence of species like Mannose 5 (Man5). This metabolic engineering ensures that as the protein moves through the Golgi apparatus, the increased enzymatic density facilitates a more complete conversion to complex, fucosylated glycoforms.

This approach differs from prior art by providing a genetic baseline for glycan control that is independent of the specific cell culture media or bioreactor conditions. While previous methods often required a trial-and-error approach to media supplementation that could compromise cell viability or antibody productivity, this invention stabilizes the quality attribute at the genomic level. By optimizing the intracellular flux of the glycosylation pathway, manufacturers can achieve high-titer production without the typical trade-off in product quality or the risk of accelerated serum clearance.

How does this patent fit in bigger picture?

Technical Landscape

In the early 2010s when ’829 was filed, recombinant protein production in mammalian cell cultures was a standard industrial practice at a time when glycosylation profiles were typically managed through empirical adjustments to the extracellular environment. Systems commonly relied on the manipulation of media composition, osmolality, pH, and temperature to influence post-translational modifications, rather than direct genetic control of the internal metabolic pathways. During this era, achieving specific glycoform targets without negatively impacting cell viability or antibody yield was non-trivial due to the complex and often unpredictable nature of cellular responses to external process shifts.

Prosecution Position

The disclosed invention represents a meaningful technical advancement by shifting the control of protein glycosylation from external process variables to an internal architectural modification of the host cell. By transforming host cells to overexpress specific proteins involved in the N-glycosylation pathway—such as Mgat1, Mgat2, or Slc35a2—the solution enables the precise regulation of high mannose glycoform content, specifically reducing Mannose 5 species. This integration of pathway-specific genetic engineering overcomes the technical constraint of 'trial and error' process development, achieving the technical effect of maintaining desired glycan profiles and therapeutic effector functions without compromising cell culture performance or recombinant protein yield.

Claims

This patent contains a total of 12 claims, with claim 1 serving as the sole independent claim. The independent claim focuses on a method for controlling the high mannose glycoform levels of a recombinant protein during mammalian cell culture by overexpressing specific proteins involved in the N-glycosylation pathway, such as Mgat1, Mgat2, or Slc35a2, to ensure the mannose content remains at or below 10%. The dependent claims serve to further define the process by specifying combinations of overexpressed proteins, the sequence of cell transfection, the specific types of recombinant proteins and glycan species produced, the target mannose percentage thresholds, and the particular cell types or culture methods utilized.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
High mannose glycoform content
(Claim 1)
In one embodiment the high mannose glycan species is Mannose 5 (Man5). In another embodiment, the high mannose glycan species is Mannose 6 (Man6), Mannose 7 (Man7), Mannose 8 (including Mannose 8a and 8b; Man8a and 8b, or Mannose 9 (Man9). The invention provides a further embodiment in which the high mannose glycoform content of a recombinant protein is reduced to less than or equal to 10%.The proportion of a recombinant protein's glycan structures consisting of high mannose species, such as Mannose 5 through Mannose 9, which the present method aims to reduce to 10% or less.
N-acetyl-glucosaminyltransferase-1
(Claim 1)
The invention provides a method that regulates high mannose glycoform content by manipulating levels of expression of proteins involved in the N-glycosylation pathway. In one embodiment, the protein is N-acetyl-glucosaminyltransferase-1 (encoded by Mgat1). Analysis of siRNA results indicated that in cells treated with the Mgat1 siRNA, levels of high mannose were increased by 70%.An enzyme involved in the N-glycosylation pathway, specifically encoded by the Mgat1 gene, which is overexpressed in a host cell to modulate the high mannose glycoform content of a recombinant protein.
N-acetyl-glucosaminyltransferase-2
(Claim 1)
In another embodiment of the invention, the protein is N-acetyl-glucosaminyltransferase-2 (encoded by Mgat2). The invention also provides for transformation of the host cell to overexpress two or more proteins involved in the N-glycosylation pathway, including combinations such as Mgat1 and Mgat2. MAb B cells were transfected with a bicistronic expression vector containing Mgat1 and Mgat2 linked with furin pep2A (M1M2).An enzyme involved in the N-glycosylation pathway, specifically encoded by the Mgat2 gene, which is overexpressed in a host cell to reduce high mannose glycoform levels.
N-glycosylation pathway
(Claim 1)
The invention provides a method that regulates high mannose glycoform content by manipulating levels of expression of proteins involved in the N-glycosylation pathway. Glycosylation is a common post-translational modification in mammalian cells. Both pharmacokinetic properties and effector functions of therapeutic mAbs can be affected by glycosylation.The biological process of attaching glycans to the nitrogen atom of asparagine residues in proteins, targeted in this invention to control antibody quality attributes.
UDP-Galactose transporter
(Claim 1)
In a further embodiment of the invention, the protein is a UDP-Galactose transporter (encoded by Slc35a2). The invention provides for host cells transformed with combinations including Mgat1 and Slc35a2, with Mgat2 and Slc35a2, or with Mgat1, Mgat2 and Slc35a2. Eight different 19mer siRNAs were tested for Mgat1, Mgat2 and Slc35a2.A transport protein encoded by the Slc35a2 gene that facilitates the movement of UDP-galactose, used here to regulate N-linked glycosylation profiles in recombinant proteins.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-17596Nov 14, 2025AMGEN INC. et al v. ALKEM LABORATORIES LTD. et al
1:25-cv-17278Nov 6, 2025AMGEN INC. v. AMNEAL PHARMACEUTICALS, INC.
1:25-cv-17277Nov 6, 2025AMGEN INC. v. DR. REDDY'S LABORATORIES LTD.
1:25-cv-13358Jul 16, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-11867Jun 30, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-01080Feb 7, 2025Amgen Inc. V. Fresenius Kabi Usa, Llc

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US10106829

Application Number
US15115615A
Filing Date
Dec 11, 2014
Publication Date
Oct 23, 2018
External Links
Slate, USPTO , Google Patents