Overexpression of N-glycosylation pathway regulators to modulate glycosylation of recombinant proteins

Patent No. US10227627 (titled "Overexpression of N-glycosylation pathway regulators to modulate glycosylation of recombinant proteins") on Sep 13, 2018. The application was issued on Mar 12, 2019.

What is this patent about?

’627 is related to the field of recombinant protein production and mammalian cell culture engineering. Specifically, it addresses the technical challenge of controlling post-translational modifications, such as glycosylation, which significantly impact the efficacy, safety, and metabolic clearance of therapeutic antibodies produced in systems like Chinese hamster ovary (CHO) cells.

The underlying idea behind ’627 is that the accumulation of undesirable high mannose glycoforms can be suppressed by genetically enhancing the cell’s internal processing machinery rather than relying solely on external media adjustments. By overexpressing specific enzymes and transporters in the N-glycosylation pathway, the inventor discovered that the cell can more efficiently convert simple mannose structures into complex glycans, thereby ensuring a more consistent and human-like protein product.

The claims of ’627 focus on a method for regulating high mannose glycoform content to levels at or below 10% by transfecting host cells to overexpress Mgat1, Mgat2, or the UDP-Galactose transporter Slc35a2. The independent claims specifically cover these genetic modifications within the context of two distinct industrial scales: one utilizing alternating tangential flow (ATF) for perfusion cultures and another utilizing fed-batch culture systems, followed by the harvesting and purification of the resulting protein.

In practice, the invention works by increasing the abundance of N-acetyl-glucosaminyltransferase-1 and 2, which act as gatekeepers in the Golgi apparatus. These enzymes facilitate the transition from immature high-mannose species to complex, branched sugar chains. The addition of the Slc35a2 transporter further supports this by ensuring an adequate supply of nucleotide sugar substrates is available within the Golgi lumen to fuel these enzymatic reactions.

This approach differs from prior methods that typically relied on trial-and-error adjustments to media composition, pH, or temperature to manage glycosylation. Unlike those environmental tweaks, which often inadvertently reduce overall antibody productivity or cell viability, the genetic engineering approach described here provides a targeted mechanism to lower high mannose content without compromising the growth performance or final yield of the bioreactor.

How does this patent fit in bigger picture?

Technical Landscape

In the early 2010s when ’627 was filed, recombinant protein production in mammalian cell cultures was typically implemented using established Chinese hamster ovary (CHO) cell lines at a time when glycosylation profiles were primarily managed through external process parameters. Systems commonly relied on trial-and-error adjustments of media composition, osmolality, pH, and temperature rather than targeted genetic modification of the host cell's internal metabolic pathways. During this era, hardware and software constraints in bioreactor control made maintaining high cell densities non-trivial, often leading to dissolved oxygen sparging issues and metabolic by-product accumulation that limited the duration and yield of the production phase.

Prosecution Position

The disclosed invention represents a technical advancement by shifting the control of protein glycosylation from external environmental manipulation to an internal architectural modification of the host cell's N-glycosylation pathway. By transforming host cells to overexpress specific proteins such as N-acetyl-glucosaminyltransferase-1, N-acetyl-glucosaminyltransferase-2, or UDP-Galactose transporters, the system achieves a targeted reduction in high mannose glycoforms, specifically Mannose 5, without compromising antibody yield or culture performance. This integration of genetic pathway engineering with optimized perfusion or fed-batch strategies enables the production of recombinant proteins with precise glycan profiles while overcoming the technical constraints of nutrient depletion and metabolic instability typically associated with high-density mammalian cell cultures.

Claims

This patent contains a total of 21 claims, with claims 1 and 6 serving as the independent claims. The independent claims focus on methods for regulating the high mannose glycoform content of recombinant proteins to 10% or less by transfecting mammalian host cells to overexpress specific N-glycosylation pathway proteins, such as Mgat1, Mgat2, or Slc35a2, within either alternating tangential flow perfusion or fed-batch culture systems. The dependent claims serve to specify operational parameters such as perfusion timing, feeding schedules, inoculation densities, and the use of specific protein combinations, while also defining the types of recombinant proteins produced and further limiting the target glycoform percentages.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Alternating tangential flow (ATF)
(Claim 1)
In further embodiments of the invention, perfusion is accomplished by alternating tangential flow. Alternating tangential flow is maintained by pumping medium through hollow-fiber filter modules. See e.g. U.S. Pat. No. 6,544,424.A specific perfusion filtration method used to retain cells in a bioreactor while removing spent medium by pumping the culture through hollow-fiber filter modules in a bidirectional manner.
Fed batch
(Claim 6)
The term “fed-batch culture” refers to a form of suspension culture and means a method of culturing cells in which additional components are provided to the culture at a time or times subsequent to the beginning of the culture process. The provided components typically comprise nutritional supplements for the cells which have been depleted during the culturing process. Additionally or alternatively, the additional components may include supplementary components (e.g., a cell-cycle inhibitory compound).A cell culture method where nutritional supplements or inhibitory compounds are added to the culture at one or more times after the initial start, typically without simultaneous removal of spent media.
High mannose glycoform content
(Claim 1, Claim 6)
In one embodiment the high mannose glycan species is Mannose 5 (Man5). In another embodiment, the high mannose glycan species is Mannose 6 (Man6), Mannose 7 (Man7), Mannose 8 (including Mannose 8a and 8b; Man8a and 8b, or Mannose 9 (Man9). In a further embodiment the high mannose glycan species comprise a mixture of Man5, Man6, Man7, Man8a, Man8b, and/or Man9.The proportion of a recombinant protein's total glycans that consist of high mannose species, specifically including Mannose 5 (Man5), Mannose 6 (Man6), Mannose 7 (Man7), Mannose 8 (Man8a and 8b), and/or Mannose 9 (Man9).
N-glycosylation pathway
(Claim 1, Claim 6)
The invention provides a method that regulates high mannose glycoform content by manipulating levels of expression of proteins involved in the N-glycosylation pathway. In one embodiment, the protein is N-acetyl-glucosaminyltransferase-1 (encoded by Mgat1); in another embodiment of the invention, the protein is N-acetyl-glucosaminyltransferase-2 (encoded by Mgat2). In a further embodiment of the invention, the protein is a UDP-Galactose transporter (encoded by Slc35a2).The biological process in a host cell responsible for attaching and processing N-linked glycans on proteins, involving specific enzymes and transporters that modulate glycan structure.
Overexpress
(Claim 1, Claim 6)
The present invention provides a method for regulating the high mannose glycoform content of a recombinant protein during a mammalian cell culture process comprising transforming a host cell to overexpress a protein that is involved in the N-glycosylation pathway. Genetically engineering the cell line involves transfecting, transforming or transducing the cells with a recombinant polynucleotide molecule... so as to cause the host cell to express a desired recombinant polypeptide.To cause a host cell to produce a protein at levels higher than its natural or baseline expression, typically achieved through genetic engineering such as transfection with a recombinant polynucleotide.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-17596Nov 14, 2025AMGEN INC. et al v. ALKEM LABORATORIES LTD. et al
1:25-cv-17278Nov 6, 2025AMGEN INC. v. AMNEAL PHARMACEUTICALS, INC.
1:25-cv-17277Nov 6, 2025AMGEN INC. v. DR. REDDY'S LABORATORIES LTD.
1:25-cv-13358Jul 16, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-11867Jun 30, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-01080Feb 7, 2025Amgen Inc. V. Fresenius Kabi Usa, Llc

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US10227627

Application Number
US16130879A
Filing Date
Sep 13, 2018
Publication Date
Mar 12, 2019
External Links
Slate, USPTO , Google Patents