Decreasing ornithine production to decrease high mannose glycoform content of recombinant proteins

Patent No. US10513723 (titled "Decreasing ornithine production to decrease high mannose glycoform content of recombinant proteins") on Dec 9, 2014. The application was issued on Dec 24, 2019.

What is this patent about?

’723 is related to the field of recombinant protein production and biopharmaceutical manufacturing, specifically focusing on the control of post-translational modifications. The background context involves the challenge of managing N-linked glycosylation, where the presence of high mannose glycoforms can significantly impact the therapeutic efficacy, pharmacokinetics, and clearance rates of glycoprotein drugs like monoclonal antibodies.

The underlying idea behind ’723 is that the accumulation of the amino acid ornithine within a host cell acts as a metabolic driver for the production of high mannose glycans. By recognizing that ornithine levels—which are influenced by the urea cycle and polyamine synthesis pathways—correlate directly with glycan branching completeness, the invention provides a mechanism to tune the quality of the protein by strategically accelerating or decelerating ornithine metabolism.

The claims of ’723 focus on methods for decreasing the high mannose glycoform content of a recombinant protein by manipulating the cell culture environment to reduce internal ornithine production. Specifically, the independent claims cover the addition of an arginase inhibitor to the culture medium or the titration of spermine concentrations to suppress the metabolic pathways that lead to ornithine accumulation.

In practice, the invention works by intervening in the enzymatic conversion of arginine to ornithine or by utilizing the feedback loops of the polyamine pathway. For instance, adding inhibitors like BEC or DFMO blocks the arginase enzyme, thereby lowering the pool of ornithine available to the cell. Alternatively, reducing spermine levels relieves the suppression of ornithine decarboxylase, allowing the cell to process ornithine into downstream polyamines rather than letting it accumulate and interfere with Golgi glycosylation processes.

This approach differs from prior methods that primarily focused on genetic factors or general physical parameters like temperature and pH. By identifying a specific metabolic marker—extracellular ornithine—and providing chemical means to regulate it, the invention allows for precise control over glycan profiles in various bioreactor scales. This metabolic tuning ensures that therapeutic proteins meet strict quality attributes without requiring complex genetic engineering of the host cell lines.

How does this patent fit in bigger picture?

Technical Landscape

In the mid-2010s when ’723 was filed, the production of therapeutic glycoproteins in mammalian cell culture was typically implemented using standardized media formulations where glycosylation profiles were primarily managed through genetic selection of host cell lines. At a time when systems commonly relied on empirical adjustments to physical bioreactor parameters—such as temperature, pH, or dissolved oxygen—to influence protein quality attributes, the precise control of specific N-linked glycoforms like high-mannose structures remained a significant challenge. When hardware and software constraints made real-time monitoring of intracellular metabolic flux non-trivial, biopharmaceutical manufacturing often accepted heterogeneous glycosylation patterns that could negatively impact the pharmacokinetic stability and immunogenicity of the resulting biologic products.

Prosecution Position

The disclosed invention achieves a technical advancement in bioprocessing by establishing a direct functional link between host cell ornithine metabolism and the regulation of high-mannose glycoform content in recombinant proteins. The architectural solution involves the targeted modulation of the ornithine biosynthetic pathway through the introduction of specific metabolic regulators—such as arginase inhibitors, polyamines, or enzyme inhibitors—into the cell culture medium to either increase or decrease ornithine accumulation. This integration of metabolic pathway regulation into the culturing process enables the precise tuning of N-linked glycosylation profiles, overcoming the technical constraint of glycoform heterogeneity and providing a mechanism to optimize the therapeutic efficacy and clearance rates of antibodies and cytokines produced in large-scale bioreactors.

Claims

This patent contains 17 claims, with claims 1 and 11 serving as the independent claims. The independent claims focus on methods for reducing the high mannose glycoform content of recombinant proteins by culturing host cells in media containing either an arginase inhibitor or specific concentrations of spermine to decrease internal ornithine production. The dependent claims serve to specify particular chemical types of arginase inhibitors, such as BEC or DL-a-Difluoromethylornithine, and define precise concentration ranges or values for both the inhibitors and the spermine used in the culture process.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Arginase inhibitor
(Claim 1)
In another related embodiment the arginase inhibitor is BEC (S-(2-boronoethyl)-1-cysteine) or DL-a-Difluoromethylornithine. In another related embodiment the concentration of the arginase inhibitor is at least 10 μM. In another related embodiment the concentration of the arginase inhibitor is from 10 μM to 2 mM.A chemical agent added to the cell culture medium that reduces the activity of the arginase enzyme, thereby decreasing the conversion of arginine to ornithine.
High mannose glycoform content
(Claim 1, Claim 11)
N-linked glycoproteins contain standard branched structures which are composed of mannose (Man), galactose, N-acetylglucosamine and neuramic acids. High-mannose oligosaccharides typically include two N-acetylglucosamines with multiple mannose residues (5 or more). Glycoproteins produced in mammalian cell culture may contain varied levels of these high mannose (HM or HMN) glycoforms such as Mannose5 (Man5), Mannose6 (Man6), Mannose7 (Man7), Mannose8 (Man8) and Mannose9 (Man9).The amount or proportion of oligosaccharides attached to a recombinant protein that contain two N-acetylglucosamines and five or more mannose residues (e.g., Man5 through Man9).
Ornithine production
(Claim 1, Claim 11)
The invention provides a method for manipulating the high mannose glycoform content of recombinant glycoproteins by regulating ornithine metabolism in the host cells. In one embodiment ornithine metabolism in the host cell is regulated by decreasing the accumulation of ornithine in the host cell. Ornithine accumulation in the host cell is regulated by culturing the host cell in a cell culture medium containing an arginase inhibitor or spermine.The metabolic generation or accumulation of the amino acid ornithine within the host cell, which the patent identifies as a regulator of high mannose glycosylation.
Spermine
(Claim 11)
In another embodiment ornithine accumulation in the host cell is regulated by adding 35 μM or less of spermine to the cell culture medium. In a related embodiment the concentration of spermine is 7 μM to 35 μM. In another related embodiment the concentration of spermine is 17 μM to 35 μM.A polyamine compound added to the cell culture medium at specific concentrations to regulate ornithine metabolism and reduce high mannose glycoform content.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-17596Nov 14, 2025AMGEN INC. et al v. ALKEM LABORATORIES LTD. et al
1:25-cv-17278Nov 6, 2025AMGEN INC. v. AMNEAL PHARMACEUTICALS, INC.
1:25-cv-17277Nov 6, 2025AMGEN INC. v. DR. REDDY'S LABORATORIES LTD.
1:25-cv-13358Jul 16, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-11867Jun 30, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-01080Feb 7, 2025Amgen Inc. V. Fresenius Kabi Usa, Llc

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US10513723

Application Number
US15111470A
Filing Date
Dec 9, 2014
Publication Date
Dec 24, 2019
External Links
Slate, USPTO , Google Patents