Overexpression of N-glycosylation pathway regulators to modulate glycosylation of recombinant proteins

Patent No. US10655156 (titled "Overexpression of N-glycosylation pathway regulators to modulate glycosylation of recombinant proteins") on Jan 29, 2019. The application was issued on May 19, 2020.

What is this patent about?

’156 is related to the field of recombinant protein production in mammalian cell cultures, specifically focusing on the post-translational modification of glycoproteins. In the manufacturing of therapeutic monoclonal antibodies, the glycosylation profile—particularly the presence of high mannose glycans—is a critical quality attribute that influences serum clearance, effector functions, and overall efficacy. Traditional methods to control these sugar structures often rely on trial-and-error adjustments to media or physical culture parameters, which can inadvertently degrade cell productivity and yield.

The underlying idea behind ’156 is to achieve precise control over the glycan profile by genetically optimizing the cell’s internal N-glycosylation machinery rather than relying solely on external environmental factors. The invention identifies that by overexpressing specific enzymes and transporters responsible for processing sugar chains, the cell can more efficiently convert immature high mannose structures into complex glycoforms. This metabolic engineering approach allows for a significant reduction in undesirable species like Mannose 5 (Man5) without compromising the growth or titer of the production culture.

The claims of ’156 focus on a method for decreasing high mannose glycoform content by transfecting a mammalian host cell to overexpress specific proteins involved in the N-glycosylation pathway. The independent claim specifically targets the overexpression of N-acetyl-glucosaminyltransferase-1 (Mgat1), N-acetyl-glucosaminyltransferase-2 (Mgat2), or the UDP-Galactose transporter (Slc35a2), either individually or in combination. The method further requires a specific physiological trigger to transition the cells into a production state, defined as either a temperature shift or the induction of growth arrest via L-asparagine starvation.

In practice, the invention works by increasing the abundance of the enzymes that act as gatekeepers in the Golgi apparatus. By boosting the levels of Mgat1 and Mgat2, the cell can process branched glycans more rapidly, preventing the accumulation of high mannose intermediates. The implementation utilizes a biphasic culture strategy where cells are first grown to a high density and then shifted into a high-productivity, growth-arrested state. This shift is often supported by perfusion systems, such as alternating tangential flow, which maintain a stable nutrient environment while removing metabolic byproducts.

This approach differs from prior solutions by providing a targeted genetic fix for cell lines that are naturally prone to high mannose accumulation. While previous methods attempted to suppress high mannose through media additives or pH changes—which often led to inconsistent results and lower antibody titers—the use of metabolic engineering provides a robust and scalable mechanism for glycan control. By ensuring the enzymatic capacity of the cell matches its protein production rate, the invention allows for the manufacture of highly consistent therapeutic proteins with optimized pharmacokinetic properties.

How does this patent fit in bigger picture?

Technical Landscape

In the early 2010s when ’156 was filed, recombinant protein production in mammalian cell cultures was typically implemented using Chinese hamster ovary (CHO) cells at a time when glycosylation profiles were managed through environmental adjustments such as media composition, osmolality, and temperature shifts. During this era, systems commonly relied on trial-and-error modifications of culture parameters rather than targeted genetic manipulation of the glycosylation pathway, as hardware and software constraints made the precise regulation of specific glycoforms like Mannose 5 non-trivial without negatively impacting overall antibody yield and cell viability.

Prosecution Position

The disclosed invention represents a meaningful technical advancement by providing a method to regulate high mannose glycoform content through an architectural shift toward the targeted overexpression of specific N-glycosylation pathway proteins, such as Mgat1, Mgat2, and Slc35a2. This integration of genetic engineering into the production process enables the capability to significantly decrease undesirable glycan species, specifically Mannose 5, while overcoming the technical constraint of maintaining high recombinant protein titers and cell culture performance. The structural solution of transforming host cells to overexpress these specific enzymes or transporters achieves a controlled glycosylation profile that is less dependent on fluctuating environmental culture conditions.

Claims

The patent contains a total of 21 claims, with claim 1 serving as the sole independent claim. This independent claim focuses on a method for reducing high mannose glycoform content in recombinant proteins by transfecting mammalian host cells to overexpress specific N-glycosylation pathway proteins, such as Mgat1, Mgat2, or Slc35a2, combined with either a temperature shift or growth arrest induced by asparagine starvation. The dependent claims serve to further define the process by specifying particular temperature ranges, asparagine concentrations, combinations of transfected genes, host cell types like CHO cells, and various culture techniques including perfusion and fed-batch methods, as well as final protein purification and formulation steps.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
High mannose glycoform content
(Claim 1)
In one embodiment the high mannose glycan species is Mannose 5 (Man5). In another embodiment, the high mannose glycan species is Mannose 6 (Man6), Mannose 7 (Man7), Mannose 8 (including Mannose 8a and 8b; Man8a and 8b, or Mannose 9 (Man9). In a further embodiment the high mannose glycan species comprise a mixture of Man5, Man6, Man7, Man8a, Man8b, and/or Man9.The proportion of a recombinant protein's glycan structures consisting of mannose-rich species, specifically including Mannose 5 (Man5), Mannose 6 (Man6), Mannose 7 (Man7), Mannose 8 (Man8a/b), and Mannose 9 (Man9).
L-asparagine starvation
(Claim 1)
In another embodiment the invention further comprises inducing cell growth-arrest by L-asparagine starvation followed by perfusion with a serum-free perfusion media having an L-asparagine concentration of 5 mM or less. In a related embodiment the concentration of L-asparagine in the serum-free perfusion media is 0 mM. The L-asparagine concentration of the cell culture media is monitored prior to and during L-asparagine starvation.A method of inducing cell growth-arrest by depriving the cell culture of L-asparagine or providing it at significantly reduced concentrations (5 mM or less).
N-acetyl-glucosaminyltransferase-1
(Claim 1)
The invention provides a method that regulates high mannose glycoform content by manipulating levels of expression of proteins involved in the N-glycosylation pathway. In one embodiment, the protein is N-acetyl-glucosaminyltransferase-1 (encoded by Mgat1). Analysis of these results indicated that in cells treated with the Mgat1 siRNA, levels of HM were increased by 70%.An enzyme involved in the N-glycosylation pathway, encoded by the Mgat1 gene, which when overexpressed serves to regulate or decrease high mannose glycoform content in recombinant proteins.
Temperature shift
(Claim 1)
The invention may further comprise a temperature shift during the culture. In one embodiment the temperature shift is from 36° C. to 31° C. In a related embodiment the temperature shift occurs at the transition between the growth phase and production phase.A deliberate change in the incubation temperature of the cell culture, typically occurring at the transition between the growth phase and the production phase to initiate growth arrest or maximize protein production.
UDP-Galactose transporter
(Claim 1)
In a further embodiment of the invention, the protein is a UDP-Galactose transporter (encoded by Slc35a2). The invention provides a method for regulating the high mannose glycoform content of a recombinant protein during a mammalian cell culture process comprising transforming a host cell to overexpress a protein that is involved in the N-glycosylation pathway. A customized gene specific probe set targeting Mgat1, Mgat2, and Slc35a3, as well as normalization genes, was used.A protein involved in the N-glycosylation pathway, encoded by the Slc35a2 gene, utilized to modulate the glycosylation profile of proteins produced in mammalian cell culture.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-17596Nov 14, 2025AMGEN INC. et al v. ALKEM LABORATORIES LTD. et al
1:25-cv-17278Nov 6, 2025AMGEN INC. v. AMNEAL PHARMACEUTICALS, INC.
1:25-cv-13358Jul 16, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-11867Jun 30, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-01080Feb 7, 2025Amgen Inc. V. Fresenius Kabi Usa, Llc

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US10655156

Application Number
US16261311A
Filing Date
Jan 29, 2019
Publication Date
May 19, 2020
External Links
Slate, USPTO , Google Patents