Prevention of disulfide bond reduction during recombinant production of polypeptides

Patent No. US10808037 (titled "Prevention of disulfide bond reduction during recombinant production of polypeptides") on Apr 13, 2020. The application was issued on Oct 20, 2020.

What is this patent about?

’037 is related to the field of recombinant protein production and biopharmaceutical manufacturing. Specifically, it addresses the technical challenges associated with maintaining the structural integrity of disulfide-containing polypeptides, such as monoclonal antibodies, during the transition from cell culture fermentation to the harvesting and purification stages.

The underlying idea behind ’037 is that the unintended reduction of disulfide bonds during harvest is driven by an active thioredoxin enzyme system released upon cell lysis. The inventor’s key insight was identifying that cellular enzymes—specifically thioredoxin, thioredoxin reductase, and the NADPH-generating pathways of glycolysis and the pentose phosphate pathway—remain functional in the harvested fluid and actively break the inter-chain bonds of the target protein.

The claims of ’037 focus on a method for producing a therapeutic monoclonal antibody that binds to HER2 using Chinese Hamster Ovary (CHO) cells. The claimed process specifically requires air sparging the pre-harvest cell culture fluid following the production phase to inhibit disulfide bond reduction, maintaining a dissolved oxygen level of at least 10% to counteract the reducing environment.

In practice, this implementation works by utilizing oxygen as a non-specific oxidizing agent to deplete the necessary cofactors, such as NADPH and glucose-6-phosphate, that the thioredoxin system requires to function. By maintaining a minimum dissolved oxygen threshold, the method ensures that the redox potential of the fluid remains oxidative, effectively neutralizing the enzymatic machinery that would otherwise fragment the antibody into separate heavy and light chains.

This approach differs from prior solutions by targeting the biochemical root cause of bond instability rather than merely adjusting generic storage temperatures or speeds. While traditional methods often struggle with protein degradation once cell lysis reaches a certain threshold, this invention provides a robust mechanical control—aeration—to stabilize the antibody’s tertiary structure throughout the critical harvesting window before formal purification begins.

How does this patent fit in bigger picture?

Technical Landscape

In the mid-2000s when ’037 was filed, the production of complex therapeutic proteins was typically implemented using large-scale recombinant mammalian or bacterial cell cultures. At a time when systems commonly relied on mechanical harvesting and purification processes to isolate proteins from cell culture fluids, maintaining the structural integrity of disulfide bonds was a known challenge. During this era, hardware and software constraints in bioreactor monitoring made the prevention of post-harvest protein degradation non-trivial, as the release of intracellular components during cell lysis often created a reducing environment that could compromise the tertiary structure and biological activity of the target polypeptides.

Prosecution Position

The invention addresses the technical problem of disulfide bond reduction in recombinant proteins, such as antibodies, occurring during the harvesting and processing of cell culture fluids. The architectural solution involves the targeted integration of thioredoxin system inhibitors—including direct inhibitors, reductase inhibitors, or enzymatic pathway blockers—into the pre-harvest or harvested culture fluid. This approach achieves the technical effect of stabilizing the protein's disulfide linkages by neutralizing the enzymatic reduction pathways triggered by cell lysis. This represents a significant capability enabled in bioprocessing, allowing for the maintenance of proper protein folding and activity at manufacturing scales where endogenous reducing systems would otherwise degrade the product.

Claims

The patent contains a total of 9 claims, with claim 1 being the sole independent claim. This independent claim focuses on a manufacturing process for a therapeutic monoclonal antibody targeting HER2, specifically utilizing air sparging of a recombinant host cell culture to maintain dissolved oxygen levels and prevent disulfide bond reduction. The dependent claims serve to further define the process by specifying production scales, establishing higher thresholds for air saturation and dissolved oxygen levels, detailing subsequent recovery and purification steps, and identifying the specific antibody as trastuzumab.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Dissolved oxygen (dO 2 )
(Claim 1)
The air sparging is continued until the amount of dissolved oxygen (dO 2) in the pre-harvest cell culture fluid is at least 10%. This measure indirectly results in the inhibition of thioredoxin activity. Theoretically, such reduction might result from a variety of factors and conditions during the manufacturing process, and might be caused by a variety of reducing agents.The concentration of oxygen gas maintained within the culture fluid, measured as a percentage, used as a parameter to counteract the reducing environment created by the thioredoxin system.
Disulfide bond
(Claim 1)
The terms 'reduction' or 'disulfide bond reduction' are used in the broadest sense, and include complete and partial reduction and reduction of some or all of the disulfide bonds, interchain or intrachain, present in a protein such as an antibody. The Trx enzyme system, composed of Trx, thioredoxin reductase (TrxR) and NADPH, is a hydrogen donor system for reduction of disulfide bonds in proteins. The reduced Trx is then able to catalyze the reduction of disulfides in proteins.Covalent interchain or intrachain linkages between cysteine residues in a protein that are susceptible to reduction by the thioredoxin enzyme system during cell lysis or harvest operations.
Human epidermal growth factor receptor 2 (HER2)
(Claim 1)
Therapeutic antibodies include, without limitation, anti-HER2 antibodies. In a further embodiment, the HER receptor is HER1 and/or HER2, preferably HER2. The HER2 antibody may, for example, comprise a heavy and/or light chain variable domain sequence selected from the group consisting of SEQ ID NO: 16, 17, 18, and 19.The specific target antigen to which the therapeutic monoclonal antibody binds, defining the functional specificity of the antibody produced by the method.
Pre-harvest cell culture fluid
(Claim 1)
The instant invention generally relates to a method for preventing reduction of a disulfide bond in a polypeptide expressed in a recombinant host cell, comprising supplementing the pre-harvest or harvested culture fluid of the recombinant host cell with an inhibitor. In one embodiment, the thioredoxin inhibitor is added to the pre-harvest culture fluid. The minimum effective inhibitory concentration varies depending on the nature of the polypeptide and overall circumstances.The liquid medium containing recombinant host cells and the expressed antibody after the production phase but before the cells are separated or the fluid is processed for purification.
Sparging
(Claim 1)
The thioredoxin inhibitor is a measure indirectly resulting in the inhibition of thioredoxin activity. This embodiment includes, for example, air sparging the harvested culture fluid of the recombinant host cell. In various embodiments, indirect means for inhibiting thioredoxin activity, such as air sparging, can be combined with the use of direct thioredoxin inhibitors.The process of introducing air into the pre-harvest cell culture fluid to increase dissolved oxygen levels, thereby indirectly inhibiting the activity of the thioredoxin (Trx) system responsible for disulfide bond reduction.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
2:25-cv-14648Aug 14, 2025Genentech, Inc. V. Shanghai Henlius Biotech, Inc.

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US10808037

Application Number
US16847309A
Filing Date
Apr 13, 2020
Publication Date
Oct 20, 2020
External Links
Slate, USPTO , Google Patents