Methods And Products For Transfecting Cells

Patent No. US10982229 (titled "Methods And Products For Transfecting Cells") was filed by Factor Bioscience Inc on May 7, 2020.

What is this patent about?

’229 is related to the field of nucleic acid transfection , specifically addressing methods and reagents for inducing cells to express proteins, transfecting, gene editing, and reprogramming cells. The background acknowledges the existing methods for delivering nucleic acids to cells, including the use of transfection reagents. However, it highlights the limitations of these methods, such as the risks associated with introducing exogenous DNA and the inefficiencies of protein-based reprogramming.

The underlying idea behind ’229 is to use synthetic RNA molecules containing modified nucleotides to improve transfection efficiency and reduce toxicity. The key insight is that by incorporating non-canonical nucleotides with specific substitutions at certain positions, the RNA molecules can evade cellular defense mechanisms, leading to enhanced protein expression and reduced cell death. This approach aims to provide a safer and more effective alternative to traditional DNA-based methods for gene editing and cell reprogramming.

The claims of ’229 focus on methods for producing gene-edited cells using synthetic RNA molecules encoding TALENs (transcription activator-like effector nucleases). Claim 1 covers the basic method of transfecting a cell with two synthetic RNA molecules, each encoding a TALEN, to create a double-strand break in a target DNA sequence. Claim 10 expands on this by including a DNA repair template to facilitate the insertion of a specific DNA sequence at the site of the double-strand break.

The invention works by first synthesizing RNA molecules with modified nucleotides that encode TALEN proteins. These TALENs are designed to bind to specific DNA sequences and create a double-strand break. When a cell is transfected with these RNA molecules, the cell's ribosomes translate the RNA into TALEN proteins, which then target and cleave the DNA at the desired location. If a DNA repair template is also provided, the cell's natural repair mechanisms use the template to insert a new DNA sequence at the break site, effectively editing the gene.

This approach differentiates itself from prior methods by avoiding the use of DNA vectors, which can lead to uncontrolled mutagenesis. By using RNA, the gene-editing process is transient and less likely to cause permanent changes to the cell's genome. Furthermore, the use of modified nucleotides reduces the cell's immune response, improving cell viability and transfection efficiency. The combination of RNA-based TALENs and DNA repair templates provides a precise and controlled method for gene editing with reduced off-target effects .

How does this patent fit in bigger picture?

Technical landscape at the time

In the early 2010s when ’229 was filed, nucleic acids were typically delivered to cells using transfection reagents comprising charged lipids, lipidoids, peptides, or polymers. At a time when serum-free cell culture was gaining traction, serum albumin was commonly used as a supplement, though its undefined nature posed challenges. When gene editing was emerging, methods often relied on DNA-based vectors, which presented risks of mutagenesis.

Novelty and Inventive Step

Claims 62-82 were pending in the application. Claims 62-82 were rejected under 35 U.S.C. 112(a) or 35 U.S.C. 112 (pre-AIA), first paragraph. Claims 62-82 were rejected on the ground of nonstatutory double patenting as being unpatentable over claims 1-4, 6-12, and 14-16 of U.S. Patent No. 10,662,410. No claims are allowed.

Claims

This patent contains 21 claims, with claims 1 and 10 being independent. The independent claims are directed to in vitro or ex vivo methods for producing gene-edited cells using synthetic RNA molecules encoding fusion proteins with DNA-binding and nuclease domains, specifically TALENs, with claim 10 further including a DNA repair template for inserting a DNA sequence. The dependent claims generally specify details and variations of the methods described in the independent claims, such as the synthesis of the RNA molecules, the type of cell used, and modifications to the RNA molecules or repair template.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
DNA repair template
(Claim 10)
“When combined with a DNA template containing one or more regions of homology to the DNA of the cell, gene-editing proteins can be used to insert a DNA sequence or to otherwise alter the sequence of the DNA of the cell in a controlled manner.”A DNA molecule that includes a sequence for insertion and one or more regions of homology to the DNA of the cell.
First fusion protein
(Claim 1, Claim 10)
“Several naturally occurring proteins contain DNA-binding domains that can recognize specific DNA sequences, for example, zinc fingers (ZFs) and transcription activator-like effectors (TALEs). Fusion proteins containing one or more DNA-binding domains and the catalytic domain of a nuclease can be used to create a double-strand break in a desired region of DNA in a cell.”A protein that includes a DNA-binding domain and a catalytic domain of a nuclease.
Second fusion protein
(Claim 1, Claim 10)
“Several naturally occurring proteins contain DNA-binding domains that can recognize specific DNA sequences, for example, zinc fingers (ZFs) and transcription activator-like effectors (TALEs). Fusion proteins containing one or more DNA-binding domains and the catalytic domain of a nuclease can be used to create a double-strand break in a desired region of DNA in a cell.”A protein that includes a DNA-binding domain and a catalytic domain of a nuclease.
Target DNA sequence
(Claim 1, Claim 10)
“Fusion proteins containing one or more DNA-binding domains and the catalytic domain of a nuclease can be used to create a double-strand break in a desired region of DNA in a cell.”A DNA sequence in a cell that is targeted for a double-strand break.
Transcription activator-like effector nuclease (TALEN)
(Claim 1, Claim 10)
“Several naturally occurring proteins contain DNA-binding domains that can recognize specific DNA sequences, for example, zinc fingers (ZFs) and transcription activator-like effectors (TALEs). Fusion proteins containing one or more DNA-binding domains and the catalytic domain of a nuclease can be used to create a double-strand break in a desired region of DNA in a cell.”A fusion protein that includes a DNA-binding domain and a catalytic domain of a nuclease, where the fusion protein is a transcription activator-like effector nuclease.

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US10982229

FACTOR BIOSCIENCE INC
Application Number
US16869232
Filing Date
May 7, 2020
Status
Granted
Expiry Date
Dec 5, 2032
External Links
Slate, USPTO, Google Patents