Prevention Of Disulfide Bond Reduction During Recombinant Production Of Polypeptides

Patent No. US11078294 (titled "Prevention Of Disulfide Bond Reduction During Recombinant Production Of Polypeptides") was filed by Genentech Inc on Dec 16, 2020.

What is this patent about?

’294 is related to the field of recombinant protein production, specifically addressing the problem of disulfide bond reduction in polypeptides, such as antibodies, during the harvesting and purification process from recombinant host cell cultures. Maintaining the integrity of disulfide bonds is crucial for the proper folding and biological activity of these proteins, particularly multi-chain antibodies with inter-chain disulfide linkages. The background highlights the importance of mammalian cell culture, especially CHO cells, for producing therapeutic proteins, but acknowledges the challenges in preserving protein conformation during large-scale manufacturing.

The underlying idea behind ’294 is that the reduction of disulfide bonds during recombinant protein production is primarily caused by an active thioredoxin (Trx) system present in the harvested cell culture fluid (HCCF). This system, comprising thioredoxin, thioredoxin reductase, and NADPH, facilitates the reduction of disulfide bonds. The inventive insight is to inhibit this Trx system, or upstream components that supply it with necessary cofactors, to prevent unwanted disulfide bond reduction and maintain the structural integrity of the target polypeptide.

The claims of ’294 focus on a method for producing an antibody by expressing it in a Chinese Hamster Ovary (CHO) recombinant host cell culture, and following a production phase of the cell culture, sparging the pre-harvest cell culture fluid of the recombinant host cell with air to inhibit reduction of a disulfide bond in the antibody during processing, wherein the antibody is a therapeutic monoclonal antibody, and wherein the air sparging is continued until the amount of dissolved oxygen (dO2) in the pre-harvest cell culture fluid is at least 10%.

In practice, the invention involves supplementing the pre-harvest or harvested cell culture fluid with a thioredoxin inhibitor or employing measures that indirectly inhibit thioredoxin activity. Direct inhibitors target thioredoxin or thioredoxin reductase, while indirect methods include air sparging to oxidize reducing agents or lowering the pH to slow down thiol-disulfide exchange. The air sparging is continued until the amount of dissolved oxygen (dO2) in the pre-harvest cell culture fluid is at least 10%.

This approach differs from prior art by directly addressing the root cause of disulfide bond reduction, the active thioredoxin system, rather than merely attempting to re-oxidize reduced bonds later in the process. By inhibiting the Trx system or its upstream components, the invention provides a proactive method for preserving the structural integrity and biological activity of recombinant polypeptides, particularly antibodies, during large-scale manufacturing. This leads to a more efficient and reliable production process, yielding higher quality therapeutic proteins.

How does this patent fit in bigger picture?

Technical landscape at the time

In the mid-2000s when ’294 was filed, recombinant protein production using mammalian cell cultures, particularly CHO cells, was a well-established method for producing therapeutic proteins. At a time when maintaining the correct protein folding and disulfide bonds during purification was a significant challenge, systems commonly relied on careful control of redox conditions and protease inhibitors rather than direct inhibition of specific enzymatic pathways.

Novelty and Inventive Step

The examiner approved the claims because they found the prior art did not teach or suggest a method for producing an antibody in CHO cells that involves sparging the pre-harvest cell culture fluid with air to inhibit disulfide bond reduction during processing, especially where the air sparging continues until the dissolved oxygen level reaches at least 10%. The examiner considered this combination of features to be novel and non-obvious.

Claims

This patent contains 8 claims, with claim 1 being the only independent claim. Independent claim 1 is directed to a method for producing an antibody by sparging a Chinese Hamster Ovary cell culture with air to inhibit disulfide bond reduction. The dependent claims generally elaborate on the conditions of the method, such as scale, oxygen saturation levels, and further processing steps.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Air sparging
(Claim 1)
“In another embodiment, the thioredoxin inhibitor is a measure indirectly resulting in the inhibition of thioredoxin activity. This embodiment includes, for example, air sparging the harvested culture fluid of the recombinant host cell, and/or lowering the pH of the harvested culture fluid of the recombinant host cell.”Bubbling air through the pre-harvest cell culture fluid.
Dissolved oxygen
(Claim 1)
“In various embodiments, indirect means for inhibiting thioredoxin activity, such as air sparging and/or lowering of the pH, can be combined with the use of direct thioredoxin inhibitors, such as those listed above.”The amount of oxygen gas (O2) present in the pre-harvest cell culture fluid.
Inhibit reduction of a disulfide bond
(Claim 1)
“The present invention concerns methods for the prevention of the reduction of disulfide bonds of proteins during recombinant production. In particular, the invention concerns methods for preventing the reduction of disulfide bonds of recombinant proteins during processing following fermentation. The methods of the invention are particularly valuable for large scale production of disulfide bond containing proteins, such as at a manufacturing scale.”To prevent or reduce the breaking of sulfur-sulfur bonds within the antibody molecule, thereby maintaining its proper structure and function.
Pre-harvest cell culture fluid
(Claim 1)
“The instant invention generally relates to a method for preventing reduction of a disulfide bond in a polypeptide expressed in a recombinant host cell, comprising supplementing the pre-harvest or harvested culture fluid of the recombinant host cell with an inhibitor of thioredoxin or a thioredoxin-like protein. In one embodiment, the thioredoxin inhibitor is added to the pre-harvest culture fluid.”The liquid medium in which the recombinant host cells are cultured, before the cells are harvested for further processing.
Therapeutic monoclonal antibody
(Claim 1)
“The term “therapeutic antibody” refers to an antibody that is used in the treatment of disease. A therapeutic antibody may have various mechanisms of action. The term “monoclonal antibody” as used herein refers to an antibody obtained from a population of substantially homogeneous antibodies. i.e., the individual antibodies comprising the population are identical except for possible mutations, e.g., naturally occurring mutations, that may be present in minor amounts.”A single type of antibody, produced from a single clone of cells, that is used in the treatment of disease.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
2:25-cv-14648Aug 14, 2025Genentech, Inc. V. Shanghai Henlius Biotech, Inc.
1:23-cv-11573Jul 13, 2023Genentech, Inc. V. Biogen Ma Inc.

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US11078294

GENENTECH INC
Application Number
US17124314
Filing Date
Dec 16, 2020
Status
Granted
Expiry Date
Jul 8, 2028
External Links
Slate, USPTO, Google Patents