Ph20 Polypeptide Variants, Formulations And Uses Thereof

Patent No. US11952600 (titled "Ph20 Polypeptide Variants, Formulations And Uses Thereof") was filed by Halozyme Inc on Jun 20, 2023.

What is this patent about?

’600 is related to the field of hyaluronidase enzymes , specifically modified forms of the PH20 hyaluronidase. Hyaluronidases degrade hyaluronan, a key component of the extracellular matrix. Native PH20 increases tissue permeability and facilitates the dispersion of therapeutic agents. However, existing hyaluronidases, particularly those from non-human sources, can be immunogenic and may lack optimal stability for therapeutic applications. Therefore, there is a need for improved hyaluronidases with enhanced stability and reduced immunogenicity.

The underlying idea behind ’600 is to engineer PH20 variants with improved properties by modifying the amino acid sequence. The key inventive insight is that specific amino acid replacements can alter the stability and activity of the enzyme. By identifying residues that contribute to stability under various conditions, such as elevated temperature, agitation, low salt, or the presence of denaturing excipients, it is possible to create modified PH20 polypeptides with enhanced therapeutic potential .

The claims of ’600 focus on a modified PH20 polypeptide with at least 95% sequence identity to SEQ ID NO:3 or 32-66, excluding any signal sequence. The claims specifically cover a modified PH20 polypeptide comprising an amino acid modification at a position corresponding to position 320 with reference to amino acid positions set forth in SEQ ID NO: 3, and wherein the modification at position 320 is selected from among H, K, Rand S. The claims also cover a method for manufacture of a protein, comprising preparing a plasmid DNA containing a cDNA encoding the protein comprising an amino acid sequence, wherein the protein is a modified PH20 polypeptide.

In practice, the invention involves creating a library of PH20 variants with different amino acid replacements. These variants are then screened for their ability to degrade hyaluronan under various conditions, such as in the presence of preservatives or at elevated temperatures. Variants that exhibit improved stability or activity are selected for further development. The modified PH20 polypeptides can be produced recombinantly in cells, such as CHO cells, and purified using standard protein purification techniques.

The invention differentiates itself from prior approaches by providing specific amino acid replacements that enhance the stability and activity of PH20. Unlike previous hyaluronidases, the modified PH20 polypeptides of the present invention are engineered to withstand harsh conditions, such as those encountered during formulation and storage, while maintaining their enzymatic function. This leads to improved pharmaceutical compositions with longer shelf lives and enhanced therapeutic efficacy. The site-directed mutagenesis approach allows for precise control over the enzyme's properties, resulting in a more robust and reliable therapeutic agent.

How does this patent fit in bigger picture?

Technical landscape at the time

In the early 2010s when ’600 was filed, at a time when therapeutic proteins were typically formulated with preservatives to maintain sterility, stability under various stress conditions such as elevated temperature or agitation was a non-trivial engineering constraint. At that time, protein denaturation was commonly addressed through careful selection of excipients and optimization of buffer conditions.

Novelty and Inventive Step

The examiner approved the application because the prior art does not teach a modified PH20 polypeptide having at least 95% sequence identity to SEQ ID NO: 3 or 32-66, where the modified PH20 polypeptide includes an amino acid modification at a position corresponding to position 320 with reference to SEQ ID NO:3, and where the modification at position 320 is a replacement with H, K, or S.

Claims

This patent contains 21 claims, with independent claims 1 and 21. Independent claim 1 is directed to a modified PH20 polypeptide with specific sequence identity and modifications, while independent claim 21 is directed to a method for manufacturing a protein, specifically a modified PH20 polypeptide. The dependent claims generally elaborate on and further define the characteristics and features of the modified PH20 polypeptide, nucleic acids encoding it, compositions containing it, and methods of using those compositions.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Amino acid modification
(Claim 1, Claim 21)
“The modifications include amino acid replacement, deletion and/or insertions. For purposes herein, amino acid replacements are denoted by the single amino acid letter followed by the corresponding amino acid position in SEQ ID NO:3 in which the replacement occurs. For example, replacement with P at a position corresponding to position 204 in a PH20 polypeptide with reference to amino acid residue positions set forth in SEQ ID NO:3 means that the replacement encompasses F204P in a PH20 polypeptide set forth in SEQ ID NO:3, or the same replacement at the corresponding position in another PH20 polypeptide.”An alteration to the amino acid sequence of a PH20 polypeptide, specifically a replacement at a position corresponding to position 320 with reference to amino acid positions set forth in SEQ ID NO: 3.
Modified PH20 polypeptide
(Claim 1, Claim 21)
“Provided are modified PH20 polypeptides that have an altered property or properties compared to the PH20 polypeptide that do not have the modification(s). The modifications include amino acid replacement, deletion and/or insertions. The modified PH20 polypeptide can be one in which the unmodified form thereof has at least about 68% sequence identity to SEQ ID NO: 3 and further contains modifications that alter stability and/or can be a PH20 polypeptide that includes as many as about up to 100, 110, 120, 130, 150 amino acid differences from PH20 but retains enzymatic activity, particularly, at least about 40% of the activity of the unmodified PH20 polypeptide and exhibits increased stability, such as stability under denaturing conditions.”A PH20 polypeptide with an amino acid sequence that is at least 95% identical to SEQ ID NO:3 or 32-66, excluding any signal sequence, when aligned to maximize identical residues, and has a specific amino acid replacement at position 320.
Positions corresponding to the sequence
(Claim 1, Claim 21)
“For example, replacement with P at a position corresponding to position 204 in a PH20 polypeptide with reference to amino acid residue positions set forth in SEQ ID NO:3 means that the replacement encompasses F204P in a PH20 polypeptide set forth in SEQ ID NO:3, or the same replacement at the corresponding position in another PH20 polypeptide. Particular and exemplary modified PH20 polypeptides that exhibit increased stability, such as increased stability to a phenolic preservative, include those that contain a single amino acid modification, such as a replacement, and combinations of modifications, such as at least or 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 30, 40, 50, 60, 70, 80, 90, 100 and more modifications.”Amino acid positions in a modified PH20 polypeptide that align with the amino acid positions in SEQ ID NO: 3 or 32-66 when the sequences are aligned to maximize identical residues.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
2:25-cv-03179Apr 10, 2025People Co. Ltd. V. Lakeshore Learning Materials, Llc

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US11952600

HALOZYME INC
Application Number
US18338189
Filing Date
Jun 20, 2023
Status
Granted
Expiry Date
Dec 28, 2032
External Links
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