Host cells comprising alpha 1,2 mannosidase and culture methods thereof

Patent No. US7888101 (titled "Host cells comprising alpha 1,2 mannosidase and culture methods thereof") on Dec 6, 2006. The application was issued on Feb 15, 2011.

What is this patent about?

’101 is related to the field of recombinant protein production and glycoprotein engineering. Specifically, it addresses the technical challenge of increasing the yield and specific productivity of therapeutic proteins in host cell cultures, such as CHO or human kidney fibrosarcoma cells, without relying solely on toxic chemical inducers like sodium butyrate.

The underlying idea behind ’101 is that the MAN1C1 enzyme, typically known for its role in trimming mannose sugars during N-linked glycosylation, acts as a metabolic bottleneck or regulator for overall protein output. By artificially boosting the activity of this specific mannosidase, the cell’s internal machinery is optimized to secrete higher quantities of a target glycoprotein, effectively mimicking the productivity gains of chemical inducers while avoiding their detrimental side effects on cell health.

The claims of ’101 focus on a genetically engineered host cell that is modified to simultaneously overexpress the MAN1C1 polypeptide and a specific glycoprotein of interest. The legal protection extends to cells where the MAN1C1 sequence shares at least 85% identity with SEQ ID NO: 2, provided that this overexpression results in a measurable increase in the specific productivity—defined as picograms of protein produced per cell per day—relative to a non-engineered control cell.

In practice, the invention is implemented by transfecting host cells with heterologous expression vectors or control sequences that upregulate the endogenous MAN1C1 gene. This genetic modification ensures that the mannose-trimming step in the endoplasmic reticulum is highly efficient, which the inventors discovered correlates with a significant rise in the secretion of complex proteins like erythropoietin or darbepoetin. The system can be further enhanced by adding traditional inducers, but the core genetic modification provides a baseline productivity boost of two- to three-fold even in their absence.

This approach differs from prior methods that focused on MAN1C1 solely for its ability to alter the carbohydrate structures on a protein's surface. While earlier research viewed mannosidases as tools for glycan remodeling, this invention identifies the enzyme as a driver of total protein volume. By targeting the MAN1C1 pathway, the invention provides a way to bypass the growth-inhibitory and toxic effects of histone deacetylase inhibitors, offering a more stable and sustainable engineering solution for large-scale biopharmaceutical manufacturing.

How does this patent fit in bigger picture?

Technical Landscape

In the mid-2000s when ’101 was filed, the production of recombinant glycoproteins in mammalian host cells was typically implemented using chemical inducers to enhance yield. At a time when systems commonly relied on the addition of short-chain fatty acids like sodium butyrate to increase specific productivity, engineering constraints arose because these inducers often triggered toxic side effects or inhibited cell cycle progression, making sustained high-yield manufacturing non-trivial. Furthermore, while the enzymatic pathways for N-linked glycosylation and endoplasmic reticulum quality control were known, the regulation of these pathways was generally managed through external media additives rather than the targeted genetic modulation of specific processing enzymes to drive overall protein synthesis.

Prosecution Position

The disclosed invention represents a meaningful technical advancement through the architectural shift of engineering host cells to overexpress alpha 1,2 mannosidase (MAN1C1) to drive increased recombinant protein production. By identifying that MAN1C1 expression is a key bottleneck in the specific productivity of glycoproteins, the solution integrates heterologous expression control sequences to upregulate this specific enzyme, thereby overcoming the technical constraint of inducer-related toxicity. This structural approach achieves the technical effect of increasing specific productivity—measured in picograms per cell per day—independently of, or in synergistic combination with, traditional chemical inducers, effectively decoupling yield enhancement from the deleterious effects of global transcriptional modulators.

Claims

The patent contains a total of 28 claims, with claim 1 serving as the sole independent claim. This independent claim focuses on an engineered host cell designed to overexpress an alpha 1,2 mannosidase (MAN1C1) polypeptide alongside a glycoprotein of interest to enhance the specific productivity of that glycoprotein. The dependent claims serve to further define the invention by specifying genetic vectors and control sequences, identifying particular types of host cells and glycoproteins such as erythropoietin, establishing methods for producing and recovering the glycoproteins, and providing screening techniques for identifying protein production inducers.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Alpha 1,2 mannosidase (MAN1C1) polypeptide
(Claim 1)
Alpha 1,2 mannosidase I enzyme (MAN1C1) is an enzyme involved in glycoprotein N-linked oligosaccharide processing. The enzyme catalyzes the first mannose trimming step associated with processing of high mannose oligosaccharide structures by removing a terminal mannose sugar from the oligosaccharide. The removal of a terminal mannose sugar from Man9 to Man8 by the alpha 1,2 mannosidase I enzyme (MAN1C1) has been shown to affect the onset of the ERAD response.An enzyme involved in glycoprotein N-linked oligosaccharide processing that catalyzes the removal of a terminal mannose sugar from high mannose structures (e.g., Man9 to Man8), thereby affecting the onset of the ER-associated degradation (ERAD) response.
Engineered to overexpress
(Claim 1)
As used herein, a host cell “engineered to overexpress” a protein (or a nucleic acid encoding such protein) is a host cell, including a descendant thereof, that has been altered in such a way that higher levels of such protein are expressed than normal, compared to the unaltered host cell. Thus, included within this category are expression of proteins foreign to the host cell, proteins not naturally expressed by the host cell, or proteins naturally expressed by the host cell at relatively low levels that increase after alteration of the host cell.A host cell or descendant that has been altered (e.g., via transfection of exogenous nucleic acids or expression control sequences) to express higher levels of a protein than the unaltered or normal host cell.
Glycoprotein of interest
(Claim 1)
As used herein, a “protein of interest” is a protein (other than MAN1C1) for which the recombinant production of bulk quantities of such protein is desired. Exemplary glycoproteins of interest include secreted glycoproteins such as erythropoiesis-stimulating molecules. The recombinant proteins of interest for which expression can be increased using the materials and methods of the invention can be any polypeptide, either endogenous or exogenous to the cell.A protein (other than MAN1C1) containing N-linked oligosaccharides for which recombinant production of bulk quantities is desired, such as erythropoiesis-stimulating molecules.
Specific productivity
(Claim 1)
The amount of recombinant protein of interest produced may be measured as “specific productivity,” which is the amount of protein of interest produced per cell per day. The invention contemplates methods wherein the improved specific productivity measures at least 2 pg glycoprotein/cell/day. The expression of higher levels of MAN1C1 results in improvements in specific productivity and/or protein production of the protein of interest.A measurement of the amount of a recombinant protein of interest produced by a host cell, expressed as the mass of protein produced per cell per day (pg/cell/day).
Stringent conditions
(Claim 1)
Hybridization stringency is principally determined by temperature, ionic strength, and the concentration of denaturing agents such as formamide. Examples of “highly stringent conditions” for hybridization and washing are 0.015M sodium chloride, 0.0015M sodium citrate at 65-68° C. or 0.015M sodium chloride, 0.0015M sodium citrate, and 50% formamide at 42° C. At 0.015M sodium ion (no formamide), the melting temperature of perfectly matched long DNA is about 71° C.; with a wash at 65° C., this would allow for approximately a 6% mismatch.Specific hybridization and washing parameters (temperature, ionic strength, and denaturing agents) that allow a probe to hybridize to its target sequence with high specificity, typically allowing for approximately a 6% mismatch.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-17596Nov 14, 2025AMGEN INC. et al v. ALKEM LABORATORIES LTD. et al
1:25-cv-17278Nov 6, 2025AMGEN INC. v. AMNEAL PHARMACEUTICALS, INC.
1:25-cv-17277Nov 6, 2025AMGEN INC. v. DR. REDDY'S LABORATORIES LTD.
1:25-cv-13358Jul 16, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-11867Jun 30, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-01080Feb 7, 2025Amgen Inc. V. Fresenius Kabi Usa, Llc

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US7888101

Application Number
US11634757A
Filing Date
Dec 6, 2006
Publication Date
Feb 15, 2011
External Links
Slate, USPTO , Google Patents