Methods for refolding of recombinant antibodies

Patent No. US7928205 (titled "Methods for refolding of recombinant antibodies") on Oct 21, 2005. The application was issued on Apr 19, 2011.

What is this patent about?

’205 is related to the field of recombinant protein production and purification, specifically focusing on the structural homogeneity of IgG antibodies. In the production of therapeutic proteins using mammalian cell cultures, such as CHO cells, antibodies often exhibit conformational heterogeneity due to scrambled disulfide bonds or undesirable post-translational modifications like cysteinylation. This structural variance can lead to inconsistent biological activity, reduced stability, and difficulties in protein crystallization, posing significant challenges for pharmaceutical viability.

The underlying idea behind ’205 is that the structural heterogeneity of mammalian-expressed IgG2 antibodies—which typically elute as multiple distinct peaks on RP-HPLC—is caused by different disulfide connectivity patterns in the hinge region. By subjecting these proteins to a controlled redox coupling environment, the invention allows the molecules to reshuffle their disulfide bonds into a more uniform state. The key engineering insight is that the presence or absence of a chaotropic agent during this redox process acts as a conformational switch, allowing the manufacturer to selectively enrich one specific structural variant over others to optimize biological potency.

The claims of ’205 focus on a method for producing an IgG2 antibody preparation that is enriched for a specific structural variant by contacting the recombinantly produced protein with a reduction/oxidation coupling reagent at a pH between 5 and 11. The independent claims specifically define a process where the enrichment is modulated by the use of a denaturant; contacting the antibody with the redox reagent in the absence of a chaotropic agent enriches one structural form, while performing the same contact in the presence of a chaotropic agent enriches a different, distinct structural form.

In practice, the invention utilizes redox pairs such as cysteine/cystine or reduced/oxidized glutathione to facilitate disulfide exchange. When a chaotropic agent like guanidine hydrochloride is added at low concentrations (e.g., 0.5M to 1.5M), it slightly perturbs the antibody's tertiary structure, repositioning the hinge cysteines to favor a specific, highly active conformation. This process effectively converts less active or heterogeneous isoforms into a single, homogeneous population, which can then be isolated using standard chromatographic techniques like ion-exchange or reversed-phase HPLC.

This approach differs from prior art refolding methods which typically involve the complete denaturation and reduction of proteins derived from bacterial inclusion bodies. Instead, ’205 applies a gentle reshuffling to proteins already secreted in a folded state by mammalian cells, targeting only the problematic disulfide linkages. By eliminating variants with lower binding affinity or stability, the method produces a more compact and potent therapeutic product, resulting in up to a three-fold increase in biological activity and improved long-term storage stability compared to untreated antibody preparations.

How does this patent fit in bigger picture?

Technical Landscape

In the mid-2000s when ’205 was filed, the production of complex recombinant proteins in mammalian cell cultures was a standard industrial practice, yet it frequently encountered technical hurdles related to post-translational heterogeneity. At a time when large-scale protein expression was typically implemented using mammalian hosts to ensure proper folding and disulfide bond formation, systems commonly relied on the cell's internal machinery to manage redox potentials and thiol-disulfide exchange. However, when hardware or software constraints in the fermentation environment led to the exposure of unpaired cysteine residues, the resulting chemical modifications—such as cysteinylation or glutathionylation—made the recovery of a structurally homogeneous and biologically active product non-trivial. Engineering constraints of the era often forced a choice between harsh, multi-step denaturation-renaturation protocols derived from microbial inclusion body processing or accepting lower yields of the desired active conformational isoform.

Prosecution Position

The disclosed invention represents a meaningful technical advancement by providing a targeted refolding method that specifically addresses the problem of disulfide scrambling and cysteinylation in mammalian-produced IgG antibodies. Rather than employing total protein denaturation and reduction, the architectural solution utilizes a controlled redox coupling environment at a specific pH range to reshuffle only a subset of disulfide bonds, thereby enriching the preparation for the native, active conformation. This integration of mild redox reagents with optional chaotropic agents enables a significant technical effect: a multi-fold increase in biological activity and improved product homogeneity. By overcoming the technical constraint of post-translational heterogeneity in large, multi-subunit proteins, the method enables the production of pharmaceutical-grade antibodies with enhanced storage stability and superior crystallization properties.

Claims

This patent contains 44 claims, with claims 1 and 40 serving as the independent claims. The independent claims focus on methods for producing recombinant IgG2 antibody preparations enriched for specific structural variants by contacting the antibodies with a reduction/oxidation coupling reagent under controlled pH conditions, utilizing the presence or absence of a chaotropic agent to select for different disulfide connectivity patterns in the hinge region. The dependent claims serve to specify particular reaction parameters such as pH ranges, specific redox reagents like glutathione or cysteine, concentrations of chaotropic agents, processing times, and additional steps for purification, crystallization, and formulation of the resulting antibody products.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Chaotropic agent
(Claim 1, Claim 40)
The chaotropic agent is any chaotropic compound or physical condition known in the art. An exemplary chaotropic agent is selected from the group consisting of urea, arginine, SDS and guanidine hydrochloride. High pressure (1000-3000 bar), elevated temperature (above 55° C.), alcohol (up to 30%), low pH (below 3.5) are known to partially unfold IgG antibodies and can perform the role of the chaotropic agent.A substance or physical condition that disrupts the tertiary structure of a protein to induce partial unfolding, thereby allowing disulfide bond reshuffling when used with a redox reagent.
Disulfide connectivity
(Claim 1, Claim 40)
Disulfide bond formation in proteins in vivo is a complex process, which is determined by the redox potential of the environment and specialized thiol-disulfide exchanging enzymes. Several conformational isoforms of the same protein, but with different disulfide structures, can be generated during recombinant protein production. The invented method does not denature the protein or denatures it only and reduces/oxidizes (reshuffles) only a few disulfides.The specific pattern or arrangement of covalent bonds formed between the sulfur atoms of cysteine residues within or between polypeptide chains.
Enriched
(Claim 1, Claim 40)
The term by “preferentially enriched” means an increase in relative abundance of a desired form or increase in relative proportion of a desired form. By refolding using the methods described herein the concentration of the desired conformational form of the protein is increased (enriched or increased abundance). The refolding procedure converts non-(or less)-active IgG molecules into (more) active IgG.An increase in the relative abundance or proportion of a specific desired conformational form of a protein within a population of variants.
Hinge region
(Claim 1, Claim 40)
The method of producing an IgG2 antibody preparation enriched for one of several IgG2 structural variants which differ by disulfide connectivity in the hinge region. (Note: The specification implies the hinge region's role in structural heterogeneity through the discussion of IgG2 separate forms eluting on RP-HPLC and the reshuffling of disulfides).The flexible segment of the IgG2 antibody heavy chain that contains the cysteine residues responsible for inter-chain disulfide linkages.
IgG2 structural variants
(Claim 1, Claim 40)
Several conformational isoforms of the same protein, but with different disulfide structures, can be generated during recombinant protein production in mammalian cells due to the failing disulfide formation process. The IgG2 antibody elutes as several separate forms on RP-HPLC and the method decreases the number of forms eluting on RP-HPLC, or alters the relative distribution of the several separate forms. The method preferentially enriches at least one of the several separate forms in the preparation.Different conformational isoforms of an IgG2 antibody that possess the same primary amino acid sequence but differ in the specific arrangement of disulfide bond linkages, particularly within the hinge region.
Reduction/oxidation coupling reagent
(Claim 1, Claim 40)
The addition of reduction/oxidation (redox) coupling reagents can facilitate the formation of native-like disulfide bonds in the recombinant proteins and thus produce structurally homogeneous, more active forms of the molecule. In some embodiments, the redox coupling reagent comprises reduced glutathione and oxidized glutathione. In other particular embodiments, the reduction/oxidation coupling reagent comprises cysteine/cystine.A chemical system comprising both a reducing agent and an oxidizing agent (redox pair) used to facilitate the reshuffling or formation of native-like disulfide bonds in a protein.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-17596Nov 14, 2025AMGEN INC. et al v. ALKEM LABORATORIES LTD. et al
1:25-cv-17278Nov 6, 2025AMGEN INC. v. AMNEAL PHARMACEUTICALS, INC.
1:25-cv-17277Nov 6, 2025AMGEN INC. v. DR. REDDY'S LABORATORIES LTD.
1:25-cv-13358Jul 16, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-11867Jun 30, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-01080Feb 7, 2025Amgen Inc. V. Fresenius Kabi Usa, Llc

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US7928205

Application Number
US11255528A
Filing Date
Oct 21, 2005
Publication Date
Apr 19, 2011
External Links
Slate, USPTO , Google Patents