Prevention of disulfide bond reduction during recombinant production of polypeptides

Patent No. US8574869 (titled "Prevention of disulfide bond reduction during recombinant production of polypeptides") on Jan 19, 2012. The application was issued on Nov 5, 2013.

What is this patent about?

’869 is related to the field of recombinant protein production, specifically addressing the technical challenges associated with maintaining the structural integrity of disulfide-containing polypeptides. During the harvesting and purification of proteins like antibodies from host cell cultures, such as CHO cells, the mechanical stress of cell lysis often releases intracellular components into the media. This environment can trigger unwanted chemical reactions that compromise the protein's tertiary structure, leading to a loss of biological activity and therapeutic efficacy.

The underlying idea behind ’869 is that the unintended reduction of disulfide bonds during harvest is driven by an active thioredoxin enzyme system fueled by metabolic cofactors released from lysed cells. The inventors realized that the thioredoxin system, which requires NADPH generated through the pentose phosphate pathway and glycolysis, acts as a potent reducing agent in the harvested cell culture fluid. By targeting the availability of these reducing equivalents or inhibiting the enzymes themselves, the invention effectively halts the biochemical cascade that breaks the critical inter-chain and intra-chain bonds of the antibody.

The claims of ’869 focus on a method for preventing this disulfide bond reduction by air sparging the culture fluid following the fermentation stage. The independent claim specifically requires introducing air into either the pre-harvest or harvested culture fluid to maintain a dissolved oxygen (dO2) level of at least 10%. This physical intervention serves as a non-directed inhibitory measure that shifts the redox potential of the fluid, ensuring that the environment remains sufficiently oxidizing to counteract the enzymatic reduction process.

In practice, the invention works by continuously replenishing oxygen levels in the harvest tanks to deplete the supply of NADPH and G6P, which are essential for thioredoxin activity. While the patent describes various chemical inhibitors—such as gold complexes, metal ions like copper sulfate, and EDTA—the claimed implementation utilizes air flow to maintain an oxidizing state. This approach is particularly effective in large-scale manufacturing environments where mechanical lysis is high, as it provides a scalable way to protect the antibody without necessarily adding complex chemical reagents to the mixture.

This method differs from prior approaches by identifying the specific enzymatic root cause of bond instability in the harvest fluid rather than just treating it as a general degradation issue. By maintaining a specific oxygen saturation threshold, the process prevents the conversion of NADP+ to its reduced form, thereby starving the thioredoxin system of the energy it needs to attack the antibody's disulfide bridges. This ensures that the resulting harvested cell culture fluid contains intact, properly folded antibodies suitable for subsequent high-purity therapeutic applications.

How does this patent fit in bigger picture?

Technical Landscape

In the late 2000s when ’869 was filed, recombinant protein production was typically implemented using large-scale mammalian or bacterial cell cultures where maintaining the structural integrity of complex polypeptides was a primary engineering constraint. At a time when systems commonly relied on mechanical harvesting and purification workflows to isolate proteins from host cell fluids, the maintenance of proper tertiary structure—specifically the stability of disulfide bonds—was non-trivial due to the release of intracellular components during cell lysis. In these environments, hardware and software constraints in bioreactor management meant that the biochemical stability of the harvested fluid was often subject to the inherent enzymatic activity of the host cell's own metabolic pathways, which could inadvertently degrade the quality of the therapeutic product before final isolation.

Prosecution Position

The disclosed invention represents a meaningful technical advancement by identifying and neutralizing the specific enzymatic pathways responsible for the post-harvest degradation of disulfide bonds in recombinant proteins. The architectural solution involves the strategic integration of thioredoxin or thioredoxin-like protein inhibitors directly into the pre-harvest or harvested culture fluid, thereby arresting the thiol-disulfide exchange reactions that lead to protein reduction. This approach achieves the technical effect of stabilizing the tertiary structure of complex molecules, such as antibodies, at a manufacturing scale. By targeting the thioredoxin system and its associated NADPH-generating enzymes like G6PD and hexokinase, the method overcomes the technical constraint of product instability caused by host cell lysis, enabling the production of essentially pure and biologically active polypeptides without the risk of interchain or intrachain bond cleavage.

Claims

The patent contains a total of 10 claims, with claim 1 serving as the sole independent claim. This primary claim focuses on a method for preventing disulfide bond reduction in antibodies during the production process by sparging the culture fluid with air to maintain a dissolved oxygen level of at least 10%. The remaining dependent claims serve to further specify the process parameters, such as higher oxygen saturation levels, and define the specific types of antibodies and host cells, including both eukaryotic and prokaryotic varieties, used in the method.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Dissolved oxygen (dO 2 )
(Claim 1)
The present invention is based, at least in part, on the recognition that the root cause of this reduction is an active thioredoxin (Trx) or thioredoxin-like system in the HCCF. This embodiment includes, for example, air sparging the harvested culture fluid of the recombinant host cell. [Claim 1 specifies the amount of dissolved oxygen (dO 2 ) in the pre-harvest or harvested culture fluid is at least 10%.]The concentration of oxygen gas maintained within the culture fluid, measured as a percentage, used as an indirect means to inhibit the thioredoxin system responsible for disulfide bond reduction.
Pre-harvest or harvested culture fluid
(Claim 1)
The instant invention generally relates to a method for preventing reduction of a disulfide bond in a polypeptide expressed in a recombinant host cell, comprising supplementing the pre-harvest or harvested culture fluid of the recombinant host cell with an inhibitor. In one embodiment, the thioredoxin inhibitor is added to the pre-harvest culture fluid. In another embodiment, the thioredoxin inhibitor is added to the harvested culture fluid.The liquid medium containing the recombinant host cells and the expressed antibody either immediately before the harvesting process begins or after the cells have been collected from the fermentation vessel.
Reduction of a disulfide bond
(Claim 1)
The terms “reduction” or “disulfide bond reduction” are used in the broadest sense, and include complete and partial reduction and reduction of some or all of the disulfide bonds, interchain or intrachain, present in a protein such as an antibody. It has been experimentally found that disulfide bond reduction occurs during processing of the Harvested Cell Culture Fluid (HCCF) produced during manufacturing of recombinant proteins that contain disulfide bonds. Typically, this reduction is observed after cell lysis, especially mechanical cell lysis during harvest operations.The complete or partial chemical reduction of one or more interchain or intrachain disulfide bonds present in a protein, such as an antibody, which can occur during processing following fermentation.
Sparging
(Claim 1)
In another embodiment, the thioredoxin inhibitor is a measure indirectly resulting in the inhibition of thioredoxin activity. This embodiment includes, for example, air sparging the harvested culture fluid of the recombinant host cell. In various embodiments, indirect means for inhibiting thioredoxin activity, such as air sparging and/or lowering of the pH, can be combined with the use of direct thioredoxin inhibitors.An indirect method of inhibiting thioredoxin activity by introducing air into the culture fluid to maintain oxygen levels and prevent the reduction of disulfide bonds.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:23-cv-11573Jul 13, 2023Genentech, Inc. V. Biogen Ma Inc.

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US8574869

Application Number
US13354223A
Filing Date
Jan 19, 2012
Publication Date
Nov 5, 2013
External Links
Slate, USPTO , Google Patents