Binding molecules

Patent No. US8921522 (titled "Binding molecules") on Dec 23, 2009. The application was issued on Dec 30, 2014.

What is this patent about?

’522 is related to the field of antibody engineering and the production of therapeutic proteins. Specifically, it addresses the technical challenges associated with manufacturing monoclonal antibodies, which typically require complex assembly of two heavy and two light chains. The background context highlights the high costs of mammalian cell culture and the limitations of traditional antibody fragments, which often suffer from low stability or solubility when produced in simpler bacterial systems.

The underlying idea behind ’522 is the use of transgenic mice to generate high-affinity, heavy chain-only antibodies that bypass the need for light chain association. By engineering a genetic locus that lacks the CH1 domain—the region responsible for binding light chains—the invention forces the production of functional antibodies consisting solely of heavy chains. This allows the animal’s natural immune system to perform VDJ recombination and somatic hypermutation to create diverse, soluble binding domains that do not require complex quaternary assembly.

The claims of ’522 focus on a method for producing a soluble, antigen-specific VH binding domain using a transgenic mouse. The process involves immunizing a mouse that carries a heterologous heavy chain locus containing human V, D, and J segments linked to a constant region lacking a functional CH1 domain. The claims specifically cover the steps of immunizing the animal to trigger affinity maturation, cloning the resulting rearranged VH locus from an antibody-producing cell, and subsequently producing the soluble binding domain.

In practice, the invention works by leveraging the mouse's biological machinery to refine the antibody's fit to a specific target. Because the CH1 domain is absent, the mouse produces antibodies that are secreted as heavy-chain dimers or monomers. Once a high-affinity response is achieved, the genetic sequence for the variable region is isolated. This sequence can then be expressed in various systems, including bacteria or yeast, to produce stable, single-domain binding agents that retain the specificity and potency of a full-sized antibody.

This approach differentiates itself from prior methods by combining the benefits of in vivo selection with the simplicity of single-domain formats. Unlike phage display libraries, which often produce domains with low solubility or weak affinity, this method utilizes the mouse’s natural somatic mutation process to optimize the protein's characteristics. Furthermore, by eliminating the CH1 domain at the genomic level, the invention ensures that the resulting VH domains are intrinsically soluble and functional without the engineering hurdles typically required to stabilize human variable regions.

How does this patent fit in bigger picture?

Technical Landscape

In the mid-2000s when ’522 was filed, the production of therapeutic monoclonal antibodies was typically implemented using mammalian cell culture to ensure the correct assembly of two heavy and two light chains into H2L2 complexes. At a time when systems commonly relied on these tetrameric structures for stability and post-translational glycosylation, the use of bacterial expression for full-length antibodies was generally precluded by the complexity of inter-chain folding. Furthermore, when hardware or software constraints made the large-scale engineering of bispecific antibodies non-trivial, researchers faced significant technical hurdles regarding heavy and light chain mispairing, which often resulted in low yields of the desired functional heterodimers.

Prosecution Position

The disclosed invention represents a meaningful technical advancement through the architectural shift from traditional tetrameric antibodies to a diverse repertoire of functional heavy chain-only antibodies generated in transgenic mammals. By utilizing a heterologous heavy chain locus specifically engineered to lack the CH1 domain across multiple classes, the system overcomes the technical constraint of light-chain dependency for B-cell maturation and antibody secretion. This integration of VDJ recombination and in vivo somatic hypermutation within a simplified heavy chain structure enables the capability to produce high-affinity, soluble human VH binding domains and class-specific homodimers. The resulting technical effect is the efficient generation of multivalent and multi-specific polypeptide complexes that retain effector functions without the manufacturing redundancies associated with light-chain pairing.

Claims

The patent contains a total of 5 claims, with claim 1 serving as the sole independent claim. This primary claim focuses on a method for producing a soluble, antigen-specific VH binding domain by immunizing a transgenic mouse that possesses a specific heterologous heavy chain locus designed to generate heavy chain-only antibodies lacking a functional CH1 domain. The dependent claims serve to further specify the genetic composition of the heavy chain locus and detail various laboratory techniques for isolating, cloning, and expressing the resulting binding domains, such as through hybridoma production or phage display libraries.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Affinity maturation via somatic mutation
(Claim 1)
Sequence analysis of expressed heavy chain-only mRNA, whether produced in camelids or transgenic animals, supports this observation (De Genst et al., (2005)). Sequence comparison of resultant VH domains reveals somatic mutations, indicating that affinity maturation events have occurred in the recombined D and J gene segments and also in the VH domain. The present inventors have shown that antibody diversity is generated in the CDR3 region of the functional antigen-binding domain of the heavy chain-only antibody with a more limited contribution from somatic mutations in the VH domains.The in vivo process by which the binding affinity of the recombined VDJ sequence is increased through targeted mutations during the B-cell response to an antigen.
Functional C H I domain
(Claim 1)
Analysis of heavy chain disease at the molecular level showed that mutations and deletions at the level of the genome could result in inappropriate expression of the heavy chain CH1 domain, giving rise to the expression of heavy chain-only antibody lacking the ability to bind light chain. Surprisingly, essentially normal B-cell maturation and antibody production is dependent on the complete absence of CH1 sequences from each heavy chain constant region present in the transgenic locus. Any likelihood of binding with a VL domain when expressed as part of a soluble heavy chain-only antibody complex has been eliminated by removal of the CH1 exon.The first constant region domain of a standard heavy chain that normally binds to a light chain; its absence or non-functionality is required here to prevent light chain association.
Heavy chain-only antibody
(Claim 1)
Heavy chain-only antibodies (including camelid antibodies) that can be generated by the methods of the invention show high binding affinity, resulting from V, D and J gene segment rearrangements and somatic mutations. B-cell maturation and the secretion of assembled dimers (eg IgG) or multimers (eg IgM) has no dependency on the presence or expression of light chain genes. The rearranged gene encoding a heavy chain lacks a CH1 domain and is therefore unable to associate with an immunoglobulin light chain.An antibody consisting of heavy chain dimers or multimers that lacks light chains, typically due to the absence of a CH1 domain which normally facilitates light chain association.
Heterologous V H heavy chain locus
(Claim 1)
A 'VH heavy chain locus' in the context of the present invention relates to a minimal micro-locus encoding a VH domain comprising one or more V gene segments, one or more D gene segments and one or more J gene segments, operationally linked to one or more heavy chain effector regions (each devoid of a CH1 domain). The VH heavy chain locus comprises a variable region comprising at least one human or camelid V gene segment, at least one D segment and at least one J segment wherein a human or camelid V gene segment, a D gene segment and a J gene segment are capable of recombining to form a VDJ coding sequence.A non-endogenous genetic construct comprising human V, D, and J gene segments operably linked to a heavy chain constant region lacking a CH1 domain, designed to undergo VDJ recombination.
Soluble, antigen-specific V H binding domain
(Claim 1)
An important and common feature of natural camelid and human VH regions is that each region binds as a monomer with no dependency on dimerisation with a VL region for optimal solubility and binding affinity. The VH domain as used herein remains in solution and is active in a physiological medium without the need for any other factor to maintain solubility. The VH domain is able to bind antigen as a monomer and may be produced in mono-specific, bi-specific, multi-specific, bi-valent or multivalent forms.A human immunoglobulin heavy chain variable region that is capable of binding a specific antigen as a monomer in physiological medium without requiring a light chain or additional factors to maintain solubility.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-13004Oct 14, 2025Harbour Antibodies BV v. Leveragen, Inc.

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US8921522

Application Number
US12645653A
Filing Date
Dec 23, 2009
Publication Date
Dec 30, 2014
External Links
Slate, USPTO , Google Patents