Binding molecules

Patent No. US9346877 (titled "Binding molecules") on Mar 15, 2013. The application was issued on May 24, 2016.

What is this patent about?

’877 is related to the field of antibody engineering and the production of therapeutic proteins in transgenic animals. Traditionally, monoclonal antibodies are complex tetramers requiring both heavy and light chains, which complicates manufacturing and limits the creation of multi-specific formats. The background context involves the discovery of heavy chain-only antibodies (HCAbs) in camelids and the desire to replicate this simplified structure using human-derived sequences to avoid immunogenicity while maintaining high binding affinity.

The underlying idea behind ’877 is that a functional, diverse, and high-affinity immune response can be generated in a transgenic mammal using a simplified heterologous VH heavy chain locus. By intentionally deleting the CH1 domain from the constant region, the invention forces the biological system to produce antibodies that do not require a light chain for stability or secretion. This insight allows the animal’s natural immune machinery to perform VDJ recombination and somatic hypermutation on single-domain binding units, resulting in matured human VH domains that are soluble and stable as monomers.

The claims of ’877 focus on a method for producing a soluble, antigen-specific VH binding domain by utilizing a transgenic rodent. The process requires a specific genetic construct where the heavy chain locus contains V, D, and J segments linked to a constant region that lacks a functional CH1 domain. The independent claim specifically covers the steps of immunizing this rodent, allowing for in vivo affinity maturation, and subsequently cloning the resulting VDJ sequence from an antibody-producing cell to produce the isolated single-domain binder.

In practice, the invention works by bypassing the need for complex phage display libraries to find high-affinity binders. Instead, the transgenic rodent serves as a living bioreactor that optimizes the human VH domains in response to an antigen challenge. Once the rodent’s B-cells have refined the antibody through natural selection, the genetic information for the antigen-binding domain is harvested. These domains can then be expressed in simpler microbial systems like E. coli or yeast, which are far more cost-effective than the mammalian cell cultures required for standard four-chain antibodies.

This approach differentiates itself from prior art by ensuring that the resulting antibodies are entirely devoid of light chains from the outset, preventing the solubility issues typically associated with isolated human VH domains. Unlike camelid-derived VHH fragments, which may be recognized as foreign by the human immune system, the ’877 patent enables the production of fully human sequences that have undergone natural maturation. Furthermore, the absence of the CH1 domain acts as a molecular trigger that ensures only heavy chain-only species are secreted, streamlining the recovery of potent, single-domain therapeutic candidates.

How does this patent fit in bigger picture?

Technical Landscape

In the mid-2000s when ’877 was filed, the production of therapeutic monoclonal antibodies was typically implemented using mammalian cell culture to ensure the correct assembly of two heavy and two light chains into H2L2 complexes. At a time when systems commonly relied on these tetrameric structures to maintain solubility and stability, the generation of functional heavy chain-only antibodies was largely restricted to specific species like camelids or required complex engineering of human VH domains to prevent aggregation. Hardware and software constraints in recombinant design made the in vivo maturation and secretion of high-affinity, class-specific human heavy chain-only antibodies non-trivial without the presence of light chain partners.

Prosecution Position

The disclosed invention represents a meaningful technical advancement through the architectural shift of utilizing a transgenic micro-locus that lacks the CH1 domain across multiple heavy chain constant regions, enabling the production of a diverse repertoire of class-specific heavy chain-only antibodies. This integration of human V, D, and J gene segments within a CH1-deficient framework overcomes the technical constraint of B-cell maturation failure typically observed when CH1 domains are present in the absence of light chains. The resulting capability enables the in vivo generation of high-affinity, soluble VH binding domains that have undergone natural affinity maturation and somatic hypermutation, providing a streamlined solution for creating multivalent and multi-specific polypeptide complexes with full effector functionality.

Claims

The patent contains a total of 8 claims, with claim 1 serving as the sole independent claim. This independent claim focuses on a method for producing a soluble, antigen-specific binding domain by immunizing a transgenic rodent that features a specific heavy chain locus designed to express antibodies lacking a functional CH1 domain. The dependent claims serve to further define the process by specifying particular laboratory techniques for isolating and expressing the binding domains, detailing the human origins and quantities of the genetic segments within the transgenic locus, and identifying the use of specific animal constant regions or the silencing of endogenous genes.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Affinity maturation via somatic mutation
(Claim 1)
Sequence comparison of resultant V H domains reveals somatic mutations, indicating that affinity maturation events have occurred in the recombined D and J gene segments and also in the V H domain of the resultant expressed antibody mRNA. Antibodies obtained according to the invention have the advantage over those of the prior art in that they are of high affinity resulting from a combination of VDJ recombination and affinity maturation in vivo.The in vivo process by which the binding affinity of the V H domain is increased through point mutations in the rearranged VDJ sequence following antigen challenge.
Functional C H 1 domain
(Claim 1)
Essentially normal B-cell maturation and antibody production is dependent on the complete absence of C H 1 sequences from each heavy chain constant region present in the transgenic locus. Interaction of the heavy and light chains is facilitated by the C H 1 region of the heavy chain and the kappa or lambda region of the light chain. Any likelihood of binding with a V L domain when expressed as part of a soluble heavy chain-only antibody complex has been eliminated by removal of the C H 1 exon.The first constant domain of a standard heavy chain that normally facilitates interaction with an immunoglobulin light chain; its absence is required for heavy chain-only antibody production.
Heavy chain-only antibody
(Claim 1)
Functional heavy chain-only antibody of potentially any class (IgM, IgG, IgD, IgA or IgE) and derived from any mammal (including man) can be produced from transgenic mammals (preferably mice) as a result of antigen challenge. For the production of heavy chain-only antibody, the heavy chain locus in the germline comprises gene segments encoding some or all of the possible constant regions. A re-arranged V H binding domain is spliced onto the C H 2 constant region-encoding segment, to provide a re-arranged gene encoding a heavy chain which lacks a C H 1 domain and is therefore unable to associate with an immunoglobulin light chain.A functional antibody consisting of heavy chain dimers or multimers that lacks light chains due to the absence of a CH1 domain in the heavy chain constant region.
Heterologous V H heavy chain locus
(Claim 1)
A “V H heavy chain locus” in the context of the present invention relates to a minimal micro-locus encoding a V H domain comprising one or more V gene segments, one or more D gene segments and one or more J gene segments, operationally linked to one or more heavy chain effector regions (each devoid of a C H 1 domain). The term ‘heterologous’ means a nucleotide sequence or a locus as herein described which is not endogenous to the mammal in which it is located.A non-endogenous genetic construct comprising V, D, and J gene segments operationally linked to at least one heavy chain constant region lacking a CH1 domain.
Soluble, antigen-specific V H binding domain
(Claim 1)
An important and common feature of natural camelid and human V H regions is that each region binds as a monomer with no dependency on dimerisation with a V L region for optimal solubility and binding affinity. The V H domain as used herein remains in solution and is active in a physiological medium without the need for any other factor to maintain solubility. The V H domain is able to bind antigen as a monomer and may be produced in mono-specific, bi-specific, multi-specific, bi-valent or multivalent forms.A monomeric antigen-binding region derived from a heavy chain-only antibody that remains in solution and retains binding affinity without requiring a light chain or a V L domain.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-13004Oct 14, 2025Harbour Antibodies BV v. Leveragen, Inc.
1:21-cv-01807Dec 23, 2021Harbour Antibodies BV et al v. Teneobio, Inc.

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US9346877

Application Number
US13837520A
Filing Date
Mar 15, 2013
Publication Date
May 24, 2016
External Links
Slate, USPTO , Google Patents