Binding molecules

Patent No. US9353179 (titled "Binding molecules") on Mar 15, 2013. The application was issued on May 31, 2016.

What is this patent about?

’179 is related to the field of antibody engineering and the production of therapeutic proteins. Specifically, it addresses the manufacture of heavy chain-only antibodies (HCAbs) in transgenic mammals. Traditional monoclonal antibodies require the complex assembly of two heavy and two light chains, which limits production efficiency and increases costs. The background context involves the need for high-affinity, soluble binding domains that can be produced in simpler expression systems while retaining the effector functions of a full antibody.

The underlying idea behind ’179 is that B-cell maturation and the production of high-affinity antibodies can occur in a transgenic system without the presence of light chains, provided the CH1 domain is entirely absent. By removing the CH1 exon from the heavy chain constant region, the invention prevents the heavy chain from requiring a light chain for stable folding and secretion. This allows the animal’s immune system to utilize natural VDJ recombination and somatic hypermutation to evolve high-affinity, soluble VH binding domains that function as autonomous units.

The claims of ’179 focus on a method for producing soluble, antigen-specific heavy chain-only antibodies by immunizing a transgenic rodent. The rodent is engineered with a heterologous locus containing at least one VH gene segment, at least five D segments, and at least one J segment, linked to a constant region that lacks a functional CH1 domain. The process specifically requires that the resulting antibodies undergo affinity maturation via somatic mutation within the rodent before being cloned and produced in a heterologous expression system.

In practice, the invention works by challenging the transgenic rodent with a target antigen, triggering a natural immune response. Because the CH1 domain is deleted, the heavy chains do not get trapped in the endoplasmic reticulum; instead, they are secreted as functional dimers or multimers. The inventor’s insight ensures that the resulting VH domains are naturally selected for solubility and stability in vivo, avoiding the aggregation issues typically seen with isolated human VH domains derived from synthetic libraries.

This approach differs from prior methods by leveraging the full power of the mammalian immune system to refine the antigen-binding repertoire. Unlike camelid-derived antibodies, which may be immunogenic in humans, or phage display techniques that lack in vivo maturation, this method produces fully humanized, high-affinity binders. By bypassing the need for light chain pairing, the invention simplifies the engineering of multispecific and multivalent complexes, significantly reducing the risk of chain mispairing during large-scale manufacturing.

How does this patent fit in bigger picture?

Technical Landscape

In the mid-2000s when ’179 was filed, the production of therapeutic monoclonal antibodies was typically implemented using standard H2L2 tetrameric structures requiring the coordinated assembly of two heavy and two light chains. At a time when mammalian cell culture was the requisite standard for ensuring proper folding and glycosylation of these complex proteins, systems commonly relied on large-scale bioreactors that faced significant scalability and cost constraints. Furthermore, when engineering multi-specific or multivalent reagents, the inherent requirement for light chain association made the prevention of chain mispairing non-trivial, often resulting in low yields of functional heterodimers.

Prosecution Position

The disclosed invention represents a technical advancement through the architectural shift toward generating a diverse repertoire of fully functional, high-affinity heavy chain-only antibodies within transgenic mammals. By utilizing a heterologous heavy chain locus specifically engineered to lack the CH1 domain across multiple classes, the system enables the in vivo selection and affinity maturation of VH domains that bind antigens as monomers or homodimers without requiring light chain association. This integration of VDJ recombination and somatic hypermutation within a simplified structural framework overcomes the technical constraints of low solubility and poor affinity often associated with isolated human VH domains, while simultaneously enabling the secretion of class-specific effector molecules such as IgM and IgG.

Claims

The patent contains a total of 8 claims, with claim 1 serving as the sole independent claim. This independent claim focuses on a method for producing soluble, antigen-specific heavy chain only antibodies by immunizing a transgenic rodent that features a specific heterologous heavy chain locus designed to lack a functional CH1 domain. The dependent claims serve to further define the process by specifying particular cloning and expression techniques, detailing the genetic composition of the human gene segments within the transgenic locus, and identifying the silencing of endogenous loci or the specific species origin of the constant regions.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Affinity maturation via somatic mutation
(Claim 1)
Sequence analysis of expressed heavy chain-only mRNA, whether produced in camelids or transgenic animals, supports this observation (De Genst et al., (2005) J. Biol. Chem., 280, 14114-14121). Sequence comparison of resultant VH domains reveals somatic mutations, indicating that affinity maturation events have occurred in the recombined D and J gene segments and also in the VH domain of the resultant expressed antibody mRNA.The in vivo process by which the binding affinity of the rearranged VDJ sequence is increased through the introduction of mutations during B-cell maturation following antigen challenge.
Functional C H 1 domain
(Claim 1)
The C H 1 exons alone are deleted from the heterologous locus or are absent from the locus. Surprisingly, essentially normal B-cell maturation and antibody production is dependent on the complete absence of C H 1 sequences from each heavy chain constant region present in the transgenic locus. Interaction of the heavy and light chains is facilitated by the C H 1 region of the heavy chain and the x or X region of the light chain.The first constant region domain of a standard heavy chain that normally facilitates interaction with an immunoglobulin light chain; its absence or non-functionality is required here to ensure the production of heavy chain-only antibodies.
Heavy chain-only antibody
(Claim 1)
Analysis of heavy chain disease at the molecular level showed that mutations and deletions at the level of the genome could result in inappropriate expression of the heavy chain CH1 domain, giving rise to the expression of heavy chain-only antibody lacking the ability to bind light chain. Functional heavy chain-only antibody of potentially any class (IgM, IgG, IgD, IgA or IgE) and derived from any mammal (including man) can be produced from transgenic mammals (preferably mice) as a result of antigen challenge.A functional antibody molecule consisting of heavy chain dimers or multimers that lacks light chains and is capable of antigen binding and effector function despite the absence of the CH1 domain.
Heterologous V H heavy chain locus
(Claim 1)
In the context of the present invention, the term ‘heterologous’ means a nucleotide sequence or a locus as herein described which is not endogenous to the mammal in which it is located. A “VH heavy chain locus” in the context of the present invention relates to a minimal micro-locus encoding a VH domain comprising one or more V gene segments, one or more D gene segments and one or more J gene segments, operationally linked to one or more heavy chain effector regions (each devoid of a CH1 domain).A non-endogenous genetic construct encoding a heavy chain variable domain (comprising V, D, and J segments) operably linked to at least one heavy chain constant region, specifically engineered to lack a CH1 domain to prevent light chain association.
Soluble, antigen-specific V H binding domain
(Claim 1)
A “V H domain” in the context of the present invention refers to an expression product of a V gene segment when recombined with a D gene segment and a J gene segment. Preferably, the V H domain as used herein remains in solution and is active in a physiological medium without the need for any other factor to maintain solubility. The V H domain is able to bind antigen as a monomer.A variable heavy chain region, formed by VDJ recombination and affinity maturation, that remains in solution and binds to a specific antigen as a monomer without requiring a light chain or VL domain for stability.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-13004Oct 14, 2025Harbour Antibodies BV v. Leveragen, Inc.
1:21-cv-01807Dec 23, 2021Harbour Antibodies BV et al v. Teneobio, Inc.

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US9353179

Application Number
US13837402A
Filing Date
Mar 15, 2013
Publication Date
May 31, 2016
External Links
Slate, USPTO , Google Patents