Methods for modulating mannose content of recombinant proteins

Patent No. US9359435 (titled "Methods for modulating mannose content of recombinant proteins") on Jan 14, 2013. The application was issued on Jun 7, 2016.

What is this patent about?

’435 is related to the field of recombinant glycoprotein production, specifically focusing on the post-translational modification of N-linked glycosylation. In the manufacturing of therapeutic antibodies, the presence of high-mannose oligosaccharides—those containing more than four mannose residues—is often undesirable because these structures can lead to faster clearance from the bloodstream and increased immunogenicity. The background context involves the challenge of controlling these glycan profiles within mammalian cell culture systems to ensure the safety and efficacy of the resulting biologic drugs.

The underlying idea behind ’435 is that the mannose content of a recombinant protein is not just a function of the host cell's genetic machinery, but is significantly influenced by the physical and chemical environment of the cell culture. The inventors discovered a direct correlation between high osmolality and the accumulation of high-mannose species. By maintaining the culture medium within a specific, lower osmotic pressure range and carefully selecting the chemical constituents of the feed, the invention effectively forces the cell's internal processing pathways to favor the production of low-mannose glycoproteins.

The claims of ’435 focus on a method for producing recombinant antibodies or fragments by maintaining a culture medium with an osmolality of approximately 400 mOsm/Kg or less. The independent claims require a specific combination of environmental controls: limiting potassium to 70 mM or less and sodium to 200 mM or less, ensuring the medium is substantially free of specific amino acids like alanine and glutamic acid, and incorporating an osmoprotectant such as betaine. The technical result defined by the claims is a composition where fewer than 10% of the antibody molecules possess more than four mannose residues.

In practice, the invention works by manipulating the concentration of salts and nutrients to prevent osmotic stress, which otherwise disrupts the fixed order of enzyme-mediated mannose removal in the Golgi apparatus. The addition of betaine at concentrations between 20 mM and 30 mM serves as a critical buffer against osmotic fluctuations, allowing the cells to maintain efficient glycan processing even as metabolic byproducts accumulate. This environmental stabilization ensures that the core oligosaccharide structure is successfully trimmed down to four or fewer mannose residues before the protein is secreted.

This approach differs from prior methods that relied primarily on genetic engineering of the host cell or complex downstream purification to remove high-mannose variants. Instead, ’435 provides a process-driven solution that achieves a low-mannose profile through media formulation and physical parameter control. By specifically excluding certain amino acids and tightly regulating the ionic strength of the medium, the method provides a scalable way to produce therapeutic antibodies with superior pharmacokinetic properties without the need for altering the cell's fundamental glycosylation enzymes.

How does this patent fit in bigger picture?

Technical Landscape

In the mid-2000s when ’435 was filed, the production of therapeutic glycoproteins in mammalian host cells was typically implemented using standardized nutrient media formulations such as DMEM or Ham’s F12. At a time when systems commonly relied on empirical cell culture scaling rather than precise metabolic glyco-engineering, the inherent variability of post-translational modifications like N-linked glycosylation remained a significant challenge. During this era, hardware and software constraints in bioreactor monitoring made the real-time control of complex carbohydrate branching non-trivial, often resulting in heterogeneous protein compositions where high-mannose residues were prevalent due to the natural processing limitations of the Golgi apparatus in rapidly dividing cell lines.

Prosecution Position

The disclosed invention addresses the technical problem of rapid circulatory clearance and potential immunogenicity caused by high-mannose content in recombinant glycoproteins. The architectural solution involves a strategic shift in bioprocessing by maintaining the cell culture environment at a low osmolality, specifically below 600 mOsm/Kg, through the precise manipulation of medium constituents such as potassium, sodium, and amino acid concentrations. This integration of environmental control achieves the technical effect of enriching the composition for low-mannose species (four or fewer residues), thereby overcoming the biological constraint of incomplete oligosaccharide processing and enabling the production of more stable and efficacious therapeutic antibodies.

Claims

The patent contains a total of 19 claims, with claims 1 and 14 serving as the independent claims. These independent claims focus on methods for producing recombinant antibodies or antigen-binding fragments by culturing host cells in a specific culture medium characterized by low osmolality, restricted salt concentrations, the absence of certain amino acids, and the presence of an osmoprotectant to ensure low mannose content in the resulting molecules. The dependent claims serve to further specify the process parameters, such as narrower ranges for osmolality and salt concentrations, the addition of vitamins, glucose, or peptones, specific concentrations for the osmoprotectant betaine, and details regarding the culture duration, temperature, host cell types, and recovery of the antibody.

Key Claim Terms New

Definitions of key terms used in the patent claims.

Term (Source)Support for SpecificationInterpretation
Antigen-binding fragment
(Claim 1, Claim 14)
The terms “antigen-binding portion” and “antigen-binding fragment” of an antibody (or simply “antibody portion”), as used herein, refer to one or more fragments of an antibody that selectively bind to an antigen (e.g., IL-15). Examples of antigen-binding fragments encompassed within the term “antigen-binding portion” of an antibody include (i) a Fab fragment... (ii) a F(ab′)2 fragment... (iii) a Fd fragment... (iv) a Fv fragment... (v) a dAb fragment... and (vi) an isolated complementarity determining region (CDR).One or more portions of a full-length antibody that retain the ability to selectively bind to a specific target antigen.
Mannose residues
(Claim 1, Claim 14)
As used herein, the term “low-mannose content” refers to glycoprotein compositions wherein less than about 10%, or less than about 8%, or less than about 5% (e.g., about 4% or less) of the glycoproteins in the composition have more than 4 mannose residues (i.e., are species of M5 or greater). This enriches the cell culture for glycoproteins having low mannose-content i.e., having 4 or fewer mannose residues on the oligosaccharide side chains of the glycoprotein.The individual mannose sugar units located on the oligosaccharide side chains of a glycoprotein, the count of which determines if a species is low-mannose (4 or fewer) or high-mannose (more than 4).
Osmolality
(Claim 1, Claim 14)
The term “osmolality,” as used herein, refers to a measure of the osmotic pressure of dissolved solute particles in an aqueous solution. The solute particles include both ions and non-ionized molecules. Osmolality is expressed as the concentration of osmotically active particles (i.e., osmoles) dissolved in 1 kg of solution.A measure of the osmotic pressure of dissolved solute particles (ions and non-ionized molecules) in an aqueous solution, expressed as milliosmoles per kilogram of solution (mOsm/kg).
Osmoprotectant
(Claim 1)
In yet a further embodiment of the present invention, the cell culture medium can include one or more osmoprotectants in an amount necessary to maintain the osmolality at a desired level, e.g., about 600 mOsm/Kg or less. Suitable osmoprotectants are known in the art and include, for example, betaine, glycine, L-threonine and L-proline, and derivatives thereof such as, for example, glycine betaine and betaine aldehyde.A substance added to the cell culture medium to help maintain or adjust osmolality to a desired level, such as betaine or specific amino acids.
Substantially free
(Claim 1, Claim 14)
The term “substantially free,” as used herein, generally refers to preparations of a cell culture medium which is free or has a reduced amount (i.e., relative to unmodified culture medium) of certain components. In some embodiments, a culture medium substantially free of one or more components is modified to include less than about 1%, or less than about 3%, or less than about 5%, or less than about 10% of one or more such components relative to the unmodified culture medium.A condition where a cell culture medium has a reduced amount of specific amino acids, typically less than about 10% relative to an unmodified culture medium.

Litigation Cases New

US Latest litigation cases involving this patent.

Case NumberFiling DateTitle
1:25-cv-17596Nov 14, 2025AMGEN INC. et al v. ALKEM LABORATORIES LTD. et al
1:25-cv-17278Nov 6, 2025AMGEN INC. v. AMNEAL PHARMACEUTICALS, INC.
1:25-cv-17277Nov 6, 2025AMGEN INC. v. DR. REDDY'S LABORATORIES LTD.
1:25-cv-13358Jul 16, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-11867Jun 30, 2025Amgen Inc. V. Biocon Biologics, Inc.
1:25-cv-01080Feb 7, 2025Amgen Inc. V. Fresenius Kabi Usa, Llc

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US9359435

Application Number
US13741280A
Filing Date
Jan 14, 2013
Publication Date
Jun 7, 2016
External Links
Slate, USPTO , Google Patents