IP Verse

Methods And Materials For Assessing Allelic Imbalance - EP2721181

The patent EP2721181 was granted to Gutin on Dec 18, 2019. The application was originally filed on Jun 15, 2012 under application number EP12801070A. The patent is currently recorded with a legal status of "Revoked".

EP2721181

GUTIN
Application Number
EP12801070A
Filing Date
Jun 15, 2012
Status
Revoked
Sep 2, 2022
Grant Date
Dec 18, 2019
External Links
Slate, Register, Google Patents

Patent Summary

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Patent Family

Patent Oppositions (3)

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JAMES POOLESep 18, 2020CARPMAELS & RANSFORDADMISSIBLE
HOFFMANN EITLESep 17, 2020-ADMISSIBLE
SIEMENS HEALTHCARESep 10, 2020LIERADMISSIBLE

Patent Citations (12) New

Patent citations refer to prior patents cited during different phases such as opposition or international search.

Citation PhasePublication NumberPublication Link
EXAMINATIONWO2011160063
INTERNATIONAL-SEARCH-REPORTKR20040102024
INTERNATIONAL-SEARCH-REPORTKR20100058566
INTERNATIONAL-SEARCH-REPORTUS2006088870
INTERNATIONAL-SEARCH-REPORTUS2012015050
INTERNATIONAL-SEARCH-REPORTUS6534293
INTERNATIONAL-SEARCH-REPORTWO2007035893
INTERNATIONAL-SEARCH-REPORTWO9954498
OPPOSITIONUS2010130527
OPPOSITIONWO2010028288
OPPOSITIONWO2011106541
OPPOSITIONWO2011160063

Non-Patent Literature (NPL) Citations (32) New

NPL citations refer to non-patent references such as research papers, articles, or other publications cited during examination or opposition phases.

Citation PhaseReference TextLink
EXAMINATION- G. A. Heap ET AL, "Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing", Human Molecular Genetics, gb, (20100101), vol. 19, no. 1, doi:10.1093/hmg/ddp473, ISSN 0964-6906, pages 122 - 134, XP055260656
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EXAMINATION- A. L.S. Tai, "High-throughput Loss-of-Heterozygosity Study of Chromosome 3p in Lung Cancer Using Single-Nucleotide Polymorphism Markers", Cancer Research, US, (20060415), vol. 66, no. 8, doi:10.1158/0008-5472.CAN-05-2775, ISSN 0008-5472, pages 4133 - 4138, XP055260697
EXAMINATION- S. Jacobs ET AL, "Genome-Wide, High-Resolution Detection of Copy Number, Loss of Heterozygosity, and Genotypes from Formalin-Fixed, Paraffin-Embedded Tumor Tissue Using Microarrays", CANCER RESEARCH, US, (20070315), vol. 67, no. 6, doi:10.1158/0008-5472.CAN-06-3597, ISSN 0008-5472, pages 2544 - 2551, XP055491831
INTERNATIONAL-SEARCH-REPORT- HENNESSY, BRYAN T. J. ET AL., "Somatic mutations in BRCA1 and BRCA2 could expand the number of patients that benefit from poly (ADP ribose) polymerase inhibitors in ovarian cancer", JOURNAL OF CLINICAL ONCOLOGY, (20100706), vol. 28, no. 22, pages 3570 - 3576, XP055070076
OPPOSITION- Andreas Gnirke; Alexandre Melnikov; Jared Maguire; Peter Rogov; Emily M LeProust; William Brockman; Timothy Fennell; Georgia Giannoukos; Sheila Fisher; Carsten Russ; Stacey Gabriel; David B Jaffe; Eric S Lander & Chad Nusbaum, "Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing /HHS Author Manuscript/", PMC, (20090801), pages 1 - 24, XP055771855-
OPPOSITION- Heather D Kissel; Patricia C Galipeau; Xiaohong Li; And Brian J Reid, "Translation of an STR-based biomarker into a clinically compatible SNP-based platform for loss of heterozygosity", Cancer Biomarkers, (20100429), vol. 5, no. 3, pages 143 - 158, XP055769196-
OPPOSITION- Kissel Heather D. , Patricia C. Galipeau, Xiaohong Li, And Brian J. Reid, "Translation of an STR-based biomarker into a clinically compatible SNP-based platform for loss of heterozygosity", Cancer Biomarkers, (20090000), vol. 5, no. 3, pages 143 - 158, XP055769196-
OPPOSITION- Li Cheng; Beroukhim Rameen; Weir Barbara A; Winckler Wendy; Garraway Levi A; Sellers William R; Meyerson Matthew, "Major copy proportion analysis of tumor samples using SNP arrays", BMC Bioinformatics, (20080000), vol. 9, page 204, XP021031778-
OPPOSITION- NOVAK URBAN; ET AL, "A high-resolution allelotype of B-cell chronic lymphocytic leukemia (B-CLL)", Blood, (20020900), vol. 100, no. 5, pages 1787 - 1794, XP002606308-
OPPOSITION- Pierre Fontanillas; Landry Christian R; Wittkopp Patricia J; Russ Carsten; Gruber Jonathan D; Nusbaum Chad; Hartl Daniel L, "Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing", MOLECULAR ECOLOGY, (20100000), vol. 19, no. Suppl 1, pages 212 - 227, XP055771836-
OPPOSITION- JI, H. et al., "Molecular inversion probe assay for allelic quantitation", Methods Mol Biol., (20090000), vol. 556, doi:10.1007/978-1-60327-192-9_6, pages 67 - 87, XP009192244
OPPOSITION- Eric J Duncavage; Vincent Magrini; Nils Becker; Jon R Armstrong; Ryan T Demeter; Todd Wylie; Haley J Abel; John D Pfeifer, "Hybrid capture and next-generation sequencing idetnify viral integration sites from formalin-fixed paraffin-embedded tissue", The Journal of Molecular Diagnostics, (20110000), vol. 13, no. 3, pages 325 - 333, XP002683089
OPPOSITION- Marjo Van Puijenbroek; Jan Willem; Dierssen F; Patrick Stanssens; Ronald Van Eijk; Anne Marie Cleton-Jansen; Tom Van Wezel; Hans Morreau, "Mass Spectrometry-Based Loss of Heterozygosity Analysis of Single-Nucleotide Polymorphism Loci in Paraffin Embedded Tumors Using the MassEXTEND Assay", Journal of Molecule Diagnostics, (20050000), vol. 7, no. 5, pages 623 - 630, XP055113223
OPPOSITION- HALPER-STROMBERG, E. et al., "Performance assessment of copy number microarray platforms using a spike-in experiment", Bioinformatics, (20110415), vol. 27, no. 8, pages 1052 - 1560, XP055767685
OPPOSITION- Heap G A; Yang J H M; Downes K; Healy B C; Hunt K A; Bockett N; Franke L; Dubois P C; Mein C A; Dobson R J; Albert T J; Rodesch M J; Clayton D G; Todd J A; Van Heel D A; Plagnol V, "Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing", Human Molecular Genetics, (20100000), vol. 19, no. 1, pages 122 - 134, XP055260656
OPPOSITION- LaFramboise T, "Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances", NUCLEIC ACIDS RESEARCH, (20090000), vol. 37, no. 13, pages 4181 - 4193, XP002610883
OPPOSITION- WANG, Y. et al., "Allele quantification using molecular inversion probes (MIP", Nucleic Acids Research, (20050000), vol. 33, no. 21, doi:10.1093/nar/gni177, page e183, XP009127259
OPPOSITION- MEI, R. et al., "Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays", Genome Res, (20000000), vol. 10, doi:10.1101/gr.10.8.1126, pages 1126 - 1137, XP055153869
OPPOSITION- MEI R. et al., "Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays", Genome Res, (20000800), vol. 10, no. 8, pages 1126 - 1137, XP055153869
OPPOSITION- Tai A L S, "High-throughput Loss-of-Heterozygosity Study of Chromosome 3p in Lung Cancer Using Single-Nucleotide Polymorphism Markers", Cancer Research, (20060415), vol. 66, no. 8, pages 4133 - 4138, XP055260697
OPPOSITION- JACOBS, S. et al., "Genome-wide, High-Resolution Detection of Copy Number, Loss of Heterozygosity, and Genotypes from Formalin-Fixed, Paraffin-Embedded Tumor Tissue Using Microarrays", Cancer Res, (20070000), vol. 67, doi:10.1158/0008-5472.CAN-06-3597, pages 2544 - 2551, XP055491831
OPPOSITION- Jacobs S; Thompson E R; Nannya Y; Yamamoto G; Pillai R; Ogawa S; Bailey D K; Campbell I G, "Genome-Wide, High-Resolution Detection of Copy Number, Loss of Heterozygosity, and Genotypes from Formalin-Fixed, Paraffin-Embedded Tumor Tissue Using Microarrays", Cancer Research, (20070000), vol. 67, no. 6, pages 2544 - 2551, XP055491831
OPPOSITION- Jacobs S; Thompson E R; Nannya Y; Yamamoto G; Pillai R; Ogawa S; Bailey D K; Campbell I G, "Genome-Wide, High-Resolution Detection of Copy Number, Loss of Heterozygosity, and Genotypes from Formalin-Fixed, Paraffin-Embedded Tumor Tissue Using Microarrays", Cancer research, (20070315), vol. 67, no. 6, pages 2544 - 2551, XP055491831
OPPOSITION- WANG, Y. et al., "High quality copy number and genotype data from FFPE samples using Molecular Inversion Probe (MIP) microarrays", BMC Medical Genomics, (20090000), vol. 2, no. 8, pages 1 - 13, XP021052734
OPPOSITION- Ross J S; Cronin M, "Whole Cancer Genome Sequencing by Next-Generation Methods", American Journal of Clinical Pathology, (20110000), vol. 136, pages 527 - 539, XP055052990
OPPOSITION- LI, X. et al., "Direct Inference of SNP Heterozygosity Rates and Resolution of LOH Detection", PLoS Computational Biology, (20070000), vol. 3, no. 11, XP055767681
OPPOSITION- Michal R Schweiger; Martin Kerick; Bernd Timmermann; Marcus W Albrecht; Tatjana Borodina; Dmitri Parkhomchuk; Kurt Zatloukal; Hans Lehrach, "Genome-Wide Massively Parallel Sequencing of Formaldehyde Fixed-Paraffin Embedded (FFPE) Tumor Tissues for Copy-Number- and Mutation-Analysis", PLoS ONE, (20090000), vol. 4, no. 5, page e5548, XP055767679
OPPOSITION- SCHWEIGER, M. et al., "Genome-Wide Massively Parallel Sequencing of Formaldehyde Fixed-Paraffin Embedded (FFPE) Tumor Tissues for Copy-Number- and Mutation-Analysis", PLoS One, (20090000), vol. 4, no. 5, pages 1 - 7, XP055767679
OPPOSITION- Dale J Hedges; Guettouche Toumy; Yang Shan; Bademci Guney; Diaz Ashley; Andersen Ashley; Hulme William; Linker Sara; Mehta Arpit; Edwards Yvonne J K; Beecham Gary; Martin Eden; Pericak Vance Margaret; Zuchner Stephan; Vance Jeffery; Gilbert John; Ast Gil, "Comparison of Three Targeted Enrichment Strategies on the SOLiD Sequencing Platform", PLoS One, (20110000), vol. 6, no. 4, page e18595, XP055111721
SEARCH- NOVAK URBAN ET AL, "A high-resolution allelotype of B-cell chronic lymphocytic leukemia (B-CLL)", BLOOD, AMERICAN SOCIETY OF HEMATOLOGY, US, (20020901), vol. 100, no. 5, ISSN 0006-4971, pages 1787 - 1794, XP002606308 [X] 1-7,10 * page 1788, column 1, paragraph 1 * * page 1788, column 1, paragraph 3 - column 2, paragraph 1 * * page 1789, column 2, paragraph 2 * * figure 1 * * abstract * * the whole document * [I] 8,9,11-
SEARCH- R. MEI, "Genome-wide Detection of Allelic Imbalance Using Human SNPs and High-density DNA Arrays", GENOME RESEARCH, (20000801), vol. 10, no. 8, doi:10.1101/gr.10.8.1126, pages 1126 - 1137, XP055153869 [X] 1-7,10,11 * page 1133, column 1, paragraph 2 * * page 1135, column 1, paragraph 2 * * abstract * * the whole document * [I] 8,9

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